Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01920 ATGGAGTCCGGTACTGGAGGGGGTGGGTCCGGAGAGGACCCAGATGTCTCCGATCCTCAGAGGAAGAAGAAGCGCTACCATCGTCATACAGCCCGTCAGATTCAGGAGCTTGAAGCAATGTTCAAGGATTGTCCGCACCCGGACGAGAAGCAACGGTTGCAGTTAAGCAGGGATTTGGGGCTCGAGCCTCGCCAGATCAAGTTCTGGTTTCAAAACAGGAGAACCCAGATGAAGGCTCAACACGAACGCGCGGATAACTGCACGCTTCGGTCGGAGAACGATAAGATCCGATGTGAGAACATAGCTATTAGAGAGGCACTGAAGAATGTGATCTGTCCATCTTGTGGGGGTCCGCCAGTAGGCGAAGATATGTATTTTGATGAACAAAAACTGCGAATGGAGAATGCTCGGTTGAGAGAAGAGCTTGATAGAGTATCTAGCATTGCTGCCAAGTACATTGGGAGGCCGATTTCACGACTGGGTCCGGTTCAGCATATTCCCGTTTCTTCATTGGATTTATCTGTGGGGAGTTTTGGTGGTCAGGGGATCACTGGACCTTCCCTTGATCTTGATCTTCTTCCGGGAAGTTCTTCTATTCCCACATTGCCAATGCAGACAACGGGCATATCGGATATGGAGAAATCACTCATGGCAGAGATTGCTGCCAATGCGTTGGATGAATTGATTAGGCTTTTGCAGACGGACGAGCCCTTGTGGATAAAATCCGCAGCTGACGGAAGGGATGTTCTTAATCTTGAAAGCTATGAGAGGATATTCCCAAGGGTTAACCACATGAAAAATCCTGATATTCGGGCTGAGGCGTCGAGAGATTCAGGTGTGGTGATCATGAATGCATTGGCCTTGGTTGACATTTTTATGGACTCGAACAAATGGGTAGAGTTGTTCCCTACAATAGTGTCAGAGGCCAGGACAATCGAAGTACTTGCATCAGGCATGGTGGGAAGTAGGAGCGGATCCTTGCAACTGATGCACGAGGAATTGCAGGTGCCTTCACCTATGGTGCCAACGCGAGAATTCTATTTCCTCCGCTACTGTCAACAAATCGAGCAAGGATCGTGGGTGATAGTTGATGTGTCCTTTGATTTCTCCCGAGAGAATCAATTTGTCTCTCCTTCCCGTTCTCGAAGGCTTCCTTCGGGATGCTTGATTCAAGACATGCCCAATGGGTACTCCAAGGTTACTTGGGTGGAACATGTGGAAGTGGAAGAGAAAACTCCGACTCATCGACTTTACAGAGATCTTGTTCACAGTGGTCTGGCTTTCGGAGCTGAGCGCTGGCTTACTACTCTGCAGAGGATGTGCGAGAGATTTGCTTGTCTGATGGTGTCTGGTACCTCTACCCGAGACCTTGGTGTTATTCCCTCACCTGATGGTAGGCGAAGCATGATGAAGCTCGCCCAAAGGATGATTAACAATTTTTGCACCAGCATAAGCACATCGAGCAGCCACAGATGGACCACGCTTTCTGGTTTGAATGATGTTGGGGTTCGAGTAACGGTCCACAAGAACACAGAACCTGGCCAACCTAATGGAGTGGTACTCAGTGCGGCAACCACTATATGGCTCCCCGTATCTCCACAGAATGTATTCAATTTCTTCAGGGATGAGAGGACTCGAGCTCAGTGGGATGTTCTCTCCAATGGTAATTCGGTGCAAGAGGTTGCTCATATTGCAAATGGATCACATCCTGGAAACTGTATATCAGTTCTCAGAGCTTTCAATGCAAGCCAGAACAACATGTTGATACTGCAAGAGAGCTGCACAGACTCGTCAGGATCACTCGTAGTCTACGCTCCCGTCGAACTACCAGCTATCAACATAGCAATGAGTGGGGAAGACCCATCATACATCCCTCTACTCCCGTCAGGATTCACCATCTCCCCTGACGGCCGGCCTGATCAAGGAGCAGCTTCGACGAGCTCAAATATGCAAGGGGGTATGGGCAGGTCAGGGGGGTCGCTTATTACGGTGGCATTTCAGATACTTGTGAGCAGCTTGCCATCTGCAAAGCTGAACCTGGAGTCGGTGACAACGGTTAATAACCTTATCAGCACCACTATACAGCAAATAAAGGCTGCCTTGAATTGCCCCGGTTCTTGA 2121 0.4922 MESGTGGGGSGEDPDVSDPQRKKKRYHRHTARQIQELEAMFKDCPHPDEKQRLQLSRDLGLEPRQIKFWFQNRRTQMKAQHERADNCTLRSENDKIRCENIAIREALKNVICPSCGGPPVGEDMYFDEQKLRMENARLREELDRVSSIAAKYIGRPISRLGPVQHIPVSSLDLSVGSFGGQGITGPSLDLDLLPGSSSIPTLPMQTTGISDMEKSLMAEIAANALDELIRLLQTDEPLWIKSAADGRDVLNLESYERIFPRVNHMKNPDIRAEASRDSGVVIMNALALVDIFMDSNKWVELFPTIVSEARTIEVLASGMVGSRSGSLQLMHEELQVPSPMVPTREFYFLRYCQQIEQGSWVIVDVSFDFSRENQFVSPSRSRRLPSGCLIQDMPNGYSKVTWVEHVEVEEKTPTHRLYRDLVHSGLAFGAERWLTTLQRMCERFACLMVSGTSTRDLGVIPSPDGRRSMMKLAQRMINNFCTSISTSSSHRWTTLSGLNDVGVRVTVHKNTEPGQPNGVVLSAATTIWLPVSPQNVFNFFRDERTRAQWDVLSNGNSVQEVAHIANGSHPGNCISVLRAFNASQNNMLILQESCTDSSGSLVVYAPVELPAINIAMSGEDPSYIPLLPSGFTISPDGRPDQGAASTSSNMQGGMGRSGGSLITVAFQILVSSLPSAKLNLESVTTVNNLISTTIQQIKAALNCPGS* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01920 706 CDD START_ArGLABRA2_like 214 442 - -
Eupl04g01920 706 Pfam Homeodomain 23 78 IPR001356 GO:0003677
Eupl04g01920 706 SUPERFAMILY Bet v1-like 463 698 - -
Eupl04g01920 706 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 702 IPR042160 -
Eupl04g01920 706 SUPERFAMILY Homeodomain-like 9 80 IPR009057 -
Eupl04g01920 706 FunFam Homeobox-leucine zipper protein HDG1 10 96 - -
Eupl04g01920 706 MobiDBLite consensus disorder prediction 1 29 - -
Eupl04g01920 706 Coils Coil 128 148 - -
Eupl04g01920 706 Pfam START domain 220 443 IPR002913 GO:0008289
Eupl04g01920 706 SUPERFAMILY Bet v1-like 211 444 - -
Eupl04g01920 706 Gene3D - 11 94 - -
Eupl04g01920 706 CDD homeodomain 23 81 IPR001356 GO:0003677
Eupl04g01920 706 MobiDBLite consensus disorder prediction 635 654 - -
Eupl04g01920 706 FunFam Homeobox-leucine zipper protein GLABRA 2 219 442 - -
Eupl04g01920 706 Gene3D - 218 443 IPR023393 -
Eupl04g01920 706 ProSiteProfiles START domain profile. 210 446 IPR002913 GO:0008289
Eupl04g01920 706 ProSiteProfiles 'Homeobox' domain profile. 20 80 IPR001356 GO:0003677
Eupl04g01920 706 ProSitePatterns 'Homeobox' domain signature. 55 78 IPR017970 GO:0000981|GO:0006355
Eupl04g01920 706 MobiDBLite consensus disorder prediction 639 654 - -
Eupl04g01920 706 SMART START_1 219 443 IPR002913 GO:0008289
Eupl04g01920 706 SMART HOX_1 21 84 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01920 Eupl-Chr4 44296506 44301086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01920 21 704 Homeobox Transcription Factor Family AT1G73360 67.049 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Eupl04g01920 START 2.3e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01920 K09338 - msin:131227165 1197.96