Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01917 ATGTGGGGAGATAGAGAAAGTCTGCCAATGGAGGGAGACGGCCCAAACGAGGCCTATAGAGAGTGTTTGAGAAACCACGCGGCCAGCCTCGGCAGCTACGCAACAGACGGCTGTGGTGAGTTTACGCTCGACGATAATGCACCTGATGGGCTAAAGTGCGCTGCGTGTGGTTGTCACCGGAATTTTCACCGGAAAGTAACTATTCAAGGCGGTGCTGGTGGTGGTGGGAGAAGGGGAAGCAGCAACTGCCCTGGAAGAGACCCCACGGAAGTAATGGAACTGATAGAGTATAGGACGGTGCAGCTGAATTCGGTGGAGTCGCATGAATCGGAACGGAGCGGGAAGAAGCGAGGGAGGACCAAGTTCACGTCGGAGCAGAAGGAGGAGATGCTCGCGTTTGCTGAGAAGCTTGGGTGGAGGATACGGAGGAAAGATCAGGAAGATGAGATCGAACGGTTCTGCAAAGGTGTTGGGGTTAGTAGGCAGGTATTCAAGGTGTGGATGCACAACCACAAGAACTCTTCCTCCTCATCTGCTTCTAATGGCAATGCCTCTTCTCTTACTCAATAG 570 0.5316 MWGDRESLPMEGDGPNEAYRECLRNHAASLGSYATDGCGEFTLDDNAPDGLKCAACGCHRNFHRKVTIQGGAGGGGRRGSSNCPGRDPTEVMELIEYRTVQLNSVESHESERSGKKRGRTKFTSEQKEEMLAFAEKLGWRIRRKDQEDEIERFCKGVGVSRQVFKVWMHNHKNSSSSSASNGNASSLTQ* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01917 189 Gene3D - 101 179 - -
Eupl04g01917 189 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 19 65 IPR006456 -
Eupl04g01917 189 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 66 IPR006456 -
Eupl04g01917 189 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 18 174 - -
Eupl04g01917 189 MobiDBLite consensus disorder prediction 108 124 - -
Eupl04g01917 189 Pfam ZF-HD protein dimerisation region 18 67 IPR006456 -
Eupl04g01917 189 SUPERFAMILY Homeodomain-like 105 173 IPR009057 -
Eupl04g01917 189 MobiDBLite consensus disorder prediction 104 124 - -
Eupl04g01917 189 NCBIfam homeobox domain, ZF-HD class 115 173 IPR006455 -
Eupl04g01917 189 FunFam Zinc-finger homeodomain protein 2 103 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01917 Eupl-Chr4 44143599 44144513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01917 19 174 ZF-HD Transcription Factor Family AT4G24660 47.024 1.38e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Eupl04g01917 ZF-HD_dimer 2.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01917 - - nnu:104587730 248.054