Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01911 ATGCTCTATAGCACCACACATATGGAGCGTTCTTCGTCTGGTGTAAGAAAAGGTGCATGGACCAAAGAAGAAGATCTTCTTCTTAGGAAATGCGTCGAGAAATATGGAGAAGGAAAGTGGTATCAGGTTCCTCTTAGAGCAGGGTTGAACCGATGTCGTAAAAGCTGTAGGCTGAGATGGTTGAACTATCTTCGGCCAAATATCAAGCGAGGAAGGTTCACAGCTGACGAAGTCGATCTCATCGGAAGGATGCATAAGCTCTTAGGCAACAAATGGTCGTTAATTGCTGGTAGACTTCCGGGAAGGACAGCAAACGATGTCAAGAACTACTGGAACACTCACTTGAACAACAAAAAGCTTGTTTCTCAATGCGGTGAAGTGAAAGATGATGAACTTAGAACTATGGAGACCAAAGTTATAAAGCCTCAGCCTCGAACCTTCTCGAAAAATTCCAAGTGGTTGAGGGGGATTGGTACCTCCATGGAAATGCATAAGCCAGAACACGACTTTATTCGAGACGAACCAGTGCTATGGTTGGAAAACATTCTATTTGAAGAGGAAGATGAGAAGGGGGTCTCCAGCTCCATGAGTGGATCGTCTATGGAGGAGCTTATTACTAGCCTTTGGGTTGATGACATGGAACCAGAGACAAAGGGAGGAGGCCCTTTGGTAGAACATGGCAATATTGATTGGGATGCCTTCTGTTTGGACGGGAATCATTGGGGTCAGTTTGGGCTGGGATGA 744 0.4543 MLYSTTHMERSSSGVRKGAWTKEEDLLLRKCVEKYGEGKWYQVPLRAGLNRCRKSCRLRWLNYLRPNIKRGRFTADEVDLIGRMHKLLGNKWSLIAGRLPGRTANDVKNYWNTHLNNKKLVSQCGEVKDDELRTMETKVIKPQPRTFSKNSKWLRGIGTSMEMHKPEHDFIRDEPVLWLENILFEEEDEKGVSSSMSGSSMEELITSLWVDDMEPETKGGGPLVEHGNIDWDAFCLDGNHWGQFGLG* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01911 247 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 12 159 - -
Eupl04g01911 247 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Eupl04g01911 247 CDD SANT 72 115 IPR001005 -
Eupl04g01911 247 Gene3D - 17 69 - -
Eupl04g01911 247 CDD SANT 19 64 IPR001005 -
Eupl04g01911 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Eupl04g01911 247 SMART sant 16 66 IPR001005 -
Eupl04g01911 247 SMART sant 69 117 IPR001005 -
Eupl04g01911 247 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Eupl04g01911 247 FunFam Myb transcription factor 17 69 - -
Eupl04g01911 247 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Eupl04g01911 247 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Eupl04g01911 247 Gene3D - 72 142 - -
Eupl04g01911 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Eupl04g01911 247 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01911 Eupl-Chr4 43842635 43844270 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01911 8 151 MYB Transcription Factor Family AT1G66370 64.706 1.32e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl04g01911 Myb_DNA-binding 5.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01911 - K09422 vvi:100243253 251.906