Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01904 ATGTCCATCTTCTTCTTCTTCCTCCTCCTTTCATCCATCCTCCTATCTAATCCTTCCCCATCAACAGCCCAACAACAGCACCTATCGTCCTTTTCCATCTCCCAATCGCCATGGCGACCAGACCAGAATCAGATCCTTGTCTCCCCCAACTCCACCTTCGCCGCCGGATTCCGCCCTTCACCCAACTCTCCACAGCTCTATATCTTCGCAATTTGGTATCTAAACAGCACCGACACCGTCGTCTGGTCTGTTACTGGTAATTCTCCCGTTAACCGCTCTTCTTCTCTCCTCATCTCACCCTCCGGCGCTCTCCTCATCTCACCCTCCGGCGCTCTCCTCCTCAACGACTCCAAGGGGAATAACTTATGGTCACCACCAAGAGCTGTTGGAAAGTCAAACGCGTCGAAACTAGTCATCAACGATGATGGTAGCTTGGTTTACGAGAATTGGACAAGCTTCGACAACCCGACCGACACAATTCTTCCGACCCAGCCTATTAACGGGACGAAACTTGTCTCTAAGAATGGGAAGTTCATGTTTTCGAATTCAACCAACCTGCTTTTTAACTCGTCTGATAGTTACTGGTCAACCACGAACGCCTTTCAAGAACTGGGATCTAATGGGCAATTGGTCAGGGAAGGTGGGAATCCTATCGTATCTGCCGACCTCGGTGCTGACCGTTTGCGAAGGTTGACGCTGGACGCTGATGGAAACCTCAGAATTTATAGCCTCGAACCGGGTTCGGGTACGTGGAAAGTTGTTTGGCAAGCGAAGCAAGAACTCTGCACTATCTACGGCACTTGTGGACCAAATTACGTTTGCATGAGCGATGGCAACAATGGCACTTCCTGCATCTGTCCACCAGGTTTCCATGAACTGGGTAGCGACGACGATAAAGTTTGCGAACGGAAAATACCCCTCAAAGTCATAAACCCACAAGACAGCAGATTCCTCAGGTTGGATTACGTTAATTTCAAGGACGGATCATCAAACCAGACTGATCTACAAACTCCGAATTTCAAAACCTGCGAGTCTAGATGCCTTGCTAATCCCAAATGTCTCGGTTTTGGCTTCAAATTCGATGGAAAACAGTACTGTGTGCACCAACTGGACCGTCTTATTTACGGGTACTGGTCTCCGGGATCCGAAACTGCCATGTTCATCCGGGTATCCAAATCCGAAACCGACGTATCCAATTTCACGGGAATGACATCCATTCTAGATACTGTATGTCCAGTCCGCATAAGCCTACCGTACCCACCTAAAGAGTCGGATACTGCAACCAGGAACCTTGTCATCATCTGCACTCTCTTCGCCCTCGAACTCATAAGTGGGGTTCTCTCCTTCTGGGCTTTTCTGAAGAAATACATAAAGTACAGAGACATGGCTCAGACACTAGGACTCGAACTCCTCCCAGCAGGCGGACCCAAGCGGTTCACATACGCAGAGCTGAAAGCTGCAACCAAAAACTTCTCTAATGTTGTTGGACACGGCGGGTTCGGTATTGTTTATAAAGGAGAACTCCCTGATCACCGTATCGTAGCAGTAAAACGCCTCAAAGATATTGGTGGTGGCGAGACTGAGTTTTGGGCGGAGGTTACTATAATTGCTAGGATGCATCATCTCAACCTAGTCCGTATGTGGGGATTTTGTGCCGAGAAAACGCAGAGGATGCTGGTATATGAGTACATCCCAAATGGCTCCCTCGACAAGTACCTCTTCTCTTCATCAAACCCAAACCCACAACCTGATCAACCCGGAGAAGAAAACAGCAACATGGTTGGTACGGGTCACATTGTCCATCCGAGGCCGATATTCGACTGGAACGTCAGGTACCGTATCGCTGTCGGGGTAGCTAGGGCGATTGCGTATCTTCACGAGGAGTGTCTCGAGTGGGTTTTACACTGTGATATCAAGCCAGAGAATATCCTCCTTGAAGACGATTTCTGCCCGAAAGTATCTGATTTCGGGTTATCAAAGCTCAGAAAGAAGGAAGACAAGGTTAGCATGTCACGTATCCGAGGGACACGCGGGTACTTAGCACCTGAATGGGTAAAGATGGAGCCAATCACTGCAAAAGCTGATGTGTACAGCTTTGGGATGGTGCTGTTGGAGATAGTTAGTGGCATAAGGAACTTTGAGTTCCGGCGATCTTCACTTGACAGCGAGGAGTGGTATTTCCCGAGATGGGCGTTCGAGAAAGTTTACAGGGAGATGAGCGTGGAAGACCTTTTGGACCGTCGGATCTTAAACTGTTATGATAGTGAGGTCCACTTTGAAATGGTGGATCGGATGGTGAAAACTGCAATGTGGTGTCTCCAAGATCGGGCTGATATGAGGCCGTCTATGGGTAAAGTGGCGAAGATGCTTGAAGGGACGGTGGAGATCACTGAGCCAGGAAAACCCACACTTTTCTGCTTGGGAGATGACTAA 2433 0.4879 MSIFFFFLLLSSILLSNPSPSTAQQQHLSSFSISQSPWRPDQNQILVSPNSTFAAGFRPSPNSPQLYIFAIWYLNSTDTVVWSVTGNSPVNRSSSLLISPSGALLISPSGALLLNDSKGNNLWSPPRAVGKSNASKLVINDDGSLVYENWTSFDNPTDTILPTQPINGTKLVSKNGKFMFSNSTNLLFNSSDSYWSTTNAFQELGSNGQLVREGGNPIVSADLGADRLRRLTLDADGNLRIYSLEPGSGTWKVVWQAKQELCTIYGTCGPNYVCMSDGNNGTSCICPPGFHELGSDDDKVCERKIPLKVINPQDSRFLRLDYVNFKDGSSNQTDLQTPNFKTCESRCLANPKCLGFGFKFDGKQYCVHQLDRLIYGYWSPGSETAMFIRVSKSETDVSNFTGMTSILDTVCPVRISLPYPPKESDTATRNLVIICTLFALELISGVLSFWAFLKKYIKYRDMAQTLGLELLPAGGPKRFTYAELKAATKNFSNVVGHGGFGIVYKGELPDHRIVAVKRLKDIGGGETEFWAEVTIIARMHHLNLVRMWGFCAEKTQRMLVYEYIPNGSLDKYLFSSSNPNPQPDQPGEENSNMVGTGHIVHPRPIFDWNVRYRIAVGVARAIAYLHEECLEWVLHCDIKPENILLEDDFCPKVSDFGLSKLRKKEDKVSMSRIRGTRGYLAPEWVKMEPITAKADVYSFGMVLLEIVSGIRNFEFRRSSLDSEEWYFPRWAFEKVYREMSVEDLLDRRILNCYDSEVHFEMVDRMVKTAMWCLQDRADMRPSMGKVAKMLEGTVEITEPGKPTLFCLGDD* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01904 810 SMART serkin_6 489 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01904 810 PIRSF SRK 1 810 IPR024171 GO:0004674
Eupl04g01904 810 Pfam D-mannose binding lectin 79 170 IPR001480 -
Eupl04g01904 810 SMART blect_4 42 156 IPR001480 -
Eupl04g01904 810 FunFam S-receptor-like serine/threonine-protein kinase 460 563 - -
Eupl04g01904 810 SUPERFAMILY alpha-D-mannose-specific plant lectins 170 252 IPR036426 -
Eupl04g01904 810 ProSiteProfiles Bulb-type lectin domain profile. 31 160 IPR001480 -
Eupl04g01904 810 ProSiteProfiles PAN/Apple domain profile. 301 391 IPR003609 -
Eupl04g01904 810 PANTHER OS07G0415500 PROTEIN 5 804 - -
Eupl04g01904 810 ProSitePatterns Protein kinases ATP-binding region signature. 495 517 IPR017441 GO:0005524
Eupl04g01904 810 Gene3D Transferase(Phosphotransferase) domain 1 564 799 - -
Eupl04g01904 810 CDD STKc_IRAK 495 792 - -
Eupl04g01904 810 SUPERFAMILY Protein kinase-like (PK-like) 472 791 IPR011009 -
Eupl04g01904 810 CDD EGF 262 302 - -
Eupl04g01904 810 Pfam Protein kinase domain 493 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01904 810 Gene3D Phosphorylase Kinase; domain 1 459 563 - -
Eupl04g01904 810 Gene3D - 39 157 IPR036426 -
Eupl04g01904 810 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 184 IPR036426 -
Eupl04g01904 810 ProSiteProfiles Protein kinase domain profile. 489 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01904 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Eupl04g01904 810 FunFam Serine/threonine-protein kinase 564 801 - -
Eupl04g01904 810 Pfam S-locus glycoprotein domain 226 291 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01904 Eupl-Chr4 43558841 43561932 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01904 477 804 Receptor kinase-like Gene Family AT1G66980 42.814 2.69e-74 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Eupl04g01904 Pkinase 9.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01904 - - ming:122078333 1090.87