Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01891 ATGATTTCAACTTGGAGAAACCGAAGAGCAGGCAGGCGTGCCGGCAAGAAGCTGTCCAACGGGAACCCGAACATGGAAGTCACGATCCCAACCCATTTCAGGTGCCCCATATCGCTAGAACTTATGAAAGATCCAGTTACATTGTCGACAGGGATCACTTATAATCGGGAAAGCATCGAGACTTGGATTGAAGCCGGGAATTACACATGCCCCGTCACAAATCAAGTGCTAAGGAGCGTCGAGCAGATCCCAAACCATACTATAAGAAGGATGATACAGGATTGGTGCGTCGAGAATCGTTCTTACGGAATCGAACGGATCCCAACACCTCGAATTCCTGTCGCTCCAATTCAGGTCTCGGAGATTCTTTCGAGAATTACAGCTGCAACCCAACAAAGGGATCAAACCAAGTGTCGAGACTTGGTTGAGAAGATTAAGAACTTGGGGAAGGAAAGCGAGCGAAACAGACGGTGCATCATAGAGAACGGATCAGGAACCGTACTCTCAGCTGCGTTTGACGGATTCGTAGGAGCTTCATTTGAGAAACACGCTAAAGTATTGGAGGAGATCTTATCAGCTCTGACATGGATGTTCCCACTTGATGAAGAAGCCCAGAAATACCTAGGATCGTCAGCATCTTTAAATTGCATGATCTGGTTTTTGAAAAGTGGAGATATCTCAGGAAGGAGGAACTCAGTTTTGGTACTAAAAGAGCTTCTTTCTTTGGATCAACGACATGTAGATGCCTTAGCAGAGAACGAAGGAGTGATCGAACCATTGTTTAAACTAATCAAAGATCCCATCTGCACCACAGCAACAAATTCTTCTTTGATGATCATCTACTACTTGGTTTCATCATCTCGTCCTTCAAATGTGGAAATCAAATCAAGATTTGTAGAGATGGGGTTGGTTTCATTGCTAGTTGAGATTCTTGTCGACTCAGAAAAAGGTATATGTGAGAAGGCTTTAGGCGTTTTCGACGCGATTTGTAGTTTCGAAGATGGGAGAGAAAAGGCTTACAGTCATGCTCTAACTATGCCAGTCTTAGTTAAGAAGCTTCTACGAGTATCAGATTTGGCAACAGAGTTTGCTGTATCTGTTCTTTGGAAGGTTTGCAAGAATGAAAAGAGGGAGGAAGGAGGTGTTTTGGTGGAGGCATTGCAAGTCGGTGCTTTTCAGAAGCTTCTGTTGCTGTTACAGGTTGGTTGTGGTGAGAAAACGAAGGAGAAGGCAACAGAGCTTTTGAAATTGCTGAATCTTTACCGAGGAAGGTCGGAATGTATTGATTCAATGGATTTCAAGGAGCTGGAAAGGCCATATTAG 1323 0.4414 MISTWRNRRAGRRAGKKLSNGNPNMEVTIPTHFRCPISLELMKDPVTLSTGITYNRESIETWIEAGNYTCPVTNQVLRSVEQIPNHTIRRMIQDWCVENRSYGIERIPTPRIPVAPIQVSEILSRITAATQQRDQTKCRDLVEKIKNLGKESERNRRCIIENGSGTVLSAAFDGFVGASFEKHAKVLEEILSALTWMFPLDEEAQKYLGSSASLNCMIWFLKSGDISGRRNSVLVLKELLSLDQRHVDALAENEGVIEPLFKLIKDPICTTATNSSLMIIYYLVSSSRPSNVEIKSRFVEMGLVSLLVEILVDSEKGICEKALGVFDAICSFEDGREKAYSHALTMPVLVKKLLRVSDLATEFAVSVLWKVCKNEKREEGGVLVEALQVGAFQKLLLLLQVGCGEKTKEKATELLKLLNLYRGRSECIDSMDFKELERPY* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01891 440 PANTHER WDSAM1 PROTEIN 25 429 IPR045185 GO:0061630
Eupl04g01891 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 106 IPR013083 -
Eupl04g01891 440 Pfam U-box domain 29 100 IPR003613 GO:0004842|GO:0016567
Eupl04g01891 440 FunFam RING-type E3 ubiquitin transferase 23 105 - -
Eupl04g01891 440 SUPERFAMILY ARM repeat 120 418 IPR016024 -
Eupl04g01891 440 CDD RING-Ubox_PUB 30 79 IPR045210 -
Eupl04g01891 440 SMART Ubox_2 32 95 IPR003613 GO:0004842|GO:0016567
Eupl04g01891 440 ProSiteProfiles U-box domain profile. 28 102 IPR003613 GO:0004842|GO:0016567
Eupl04g01891 440 MobiDBLite consensus disorder prediction 1 25 - -
Eupl04g01891 440 Gene3D - 118 417 IPR011989 -
Eupl04g01891 440 SUPERFAMILY RING/U-box 16 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01891 Eupl-Chr4 43118520 43120247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01891 5 440 U-box Gene Family AT5G37490 51.247 8.87e-143 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01891 - - nnu:104613093 636.721