Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01890 ATGACGAAGAAAACCCATTTCCGATCTAGGGTTTTTACCCTTTTTCTTGTTTTTTTTCCTTCAATATTTCTCTGTGTCGAATCCCAGCTGAACCAAGGTGACGTTTCGATAATGCTGGAACTTAAAGAGAGTCTGAAGTCTTCAACAGATCTTGGTTGGTCCGACTCGGATCCCTGTAACTGGATCAACGTAGGTTGCTCTTTCGATAAACAACGGATAGCTCGGATTCAGATGAAAAGTCTAGATCTTACCGGCACTCTCCCTGCTAGTCTCAGAAACCTCACCGGGCTGCAACGATTAGAGTTTCAGGGGAACAAACTCTCCGGTCCCCTTCCCAGCTTAAATGGGTTGAGTACTTTACAGGCTTTAATTCTCACCGGAAACAACTTCACTTCGATACCGTCTGATTTCTTTTCTGGGCTTTCCTCGCTTTCAGAAGTTCGACTAGATGGAATCCCCTTCTCGGCTTGGACGATTCCGGATAGTCTTCAGAGCGCCACGGACCTTCAGAATTTCTCAGCTAATTCAGCGAATATAATTGGGAAGATTCCTGATTTCTTTGGAGGAGATGTTTTTCCTAGCTTGGAAGAATTGCATTTGTCCTTCAATAGTCTTGAAGGTGGGTTGCCGGATAGCTTTTCAGGGCTTTCAGCGATGCAGTCTCTTTGGTTGAATGGACAGAAGAGCAGCAGTAAGCTTAATGGGAGTATTGAGGTTTTAAAGAACATGACGTCTTTGAAAGAGGTCTGGTTGAATTTTAATCTGTTTTCTGGGCCGTTGCCGGATTTCTCCGGGTTGGCTGATTTGAGAGGCTTGACTCTCAGGGATAACCAGTTCACCGGTCCTGTACCAGAATCTCTGCTATCGCTTAAGAGTTTGAATTATGTCAATTTGACCAATAATTTGCTTCAAGGGCCTATGCCCAAGTTCGAAAGTTCGGTCGCGGTTGATATGAATGAGGATACTAACAGCTTCTGTAAGCCGACTCCTGGTGACTGCGATCCTCGTGTGAAGACATTGCTCTCAATTGCGAAGAATATGGGTTACCCTGCCTTTTTTGCAGAGAATTGGAAGGGAAATGATCCGTGCGTTCCTTGGGTTGGGATCAGTTGCAGCAAGGGGAACATTAACGTCGTTAACTTTCAGAAAATGGGTCTTATGGGTACGATCTCTCCTGACTTCTCCTTGCTTAAATCACTGCAAAAACTTATTCTTGCTAACAATAGTTTCATCGGTTCGATCCCGGCTGAGCTTACTACTCTAACTGACCTCAGAGAACTTGATGTGTCGAACAATCAGCTTTCTGGGAAAATCCCGGCTTTTAGAAGTAATGTGAATGTAATTATTAATGGGAACCCGAATATCCGGAAGGAAATTGATATTCCATCTCCGAACACCCCACCTAGGAGTCCACCTGGTCCGTCGTCTGGTGGAAACCCTGGAACGGACAATGGTTCCGGAAGTGGAGGCAAGAAATCTTCGATTCCAATTGGAGTTGTTGTGGGTTCTGTTATTGGTGGTGTCTGTGTGATTTTCTTGGTTGGATTACTAGGATTCTGTTTTTATAAGAGAAAACAACAGCGGTTTGGTAGAGTTCAGAGCCCAAATACAATGGTTATCCATCCTCGCCATTCTGGGTCAGATCCTGAGATGGTGAAGATCACAGTTGCGGGCTCAAGCGTGAATGGTGGTACCACAAGTGAAACCTACAGCCGGACGAGCAGTGGGCCTAGTGACATCCAAGTGGTTGAAGCAGGAAACATGGTGATTTCCATTCAAGTCCTAAGAAATGTGACGAACAATTTTAGTGAAGAGAATATATTGGGACGGGGAGGTTTTGGGACCGTTTACAAAGGAGAATTGCATGATGGAACGAAGATTGCAGTGAAGAGAATGGAGTCTGGGGTGGTGACTGAAAAGGGGTTGACTGAGTTCAAGTCTGAGATTGCTGTTCTTACTAAGGTCCGACACCGGCATCTCGTCGCTCTTCTCGGTTACTGTTTAGATGGTAATGAGAGGCTTCTTGTGTATGAGTACATGCCACAGGGGACACTGAGTCACCACCTTTTTAACTGGAAGGAAGAAGGGTTGAAGCCTCTTGAGTGGACAAGAAGGTTGAGCATTGCCTTGGATGTGGCTAGGGGTGTTGAGTACCTACATGGTTTAGCCCATCAGAGTTTCATCCACAGGGACCTCAAGCCCTCCAATATTCTTCTTGGAGATGATATGAGGGCTAAGGTTGCGGATTTCGGTCTTGTTCGTCTTGCTCCTGATGGGAAAGGCTCGGTAGAAACAAGGCTAGCTGGAACTTTTGGATATCTCGCACCGGAATATGCAGTGACCGGACGAGTGACTACGAAGGTCGACGTGTTCAGTTTCGGAGTGATACTAATGGAGGTGATCACTGGGAGGAGGGCACTCGACGAGACCCAACCCGAGGAGAGTATGCACCTAGTAACATGGTTTCGGAGAATGCACATTAACAAGGACACCTTCCGCAAGGCAATTGATCCTACAATTGACCTCACTGAGGAGACTCTCGCCAGTGTCAGCACTGTTGCCGAGCTAGCAGGCCACTGCTGTGCAAGGGAGCCATATCAGAGGCCCGACATGGGCCATGCAGTCAATGTGCTGTCGTCTCTTGTGGAGTTATGGAAGCCAGCGGACCCAGACTCTGAGGACATATATGGGATTGACCTGGACATGACCCTACCACAGGCACTTAAAAAATGGCAGGCATTCGAGGGCAACAGCCACATGGACGCTACGCCATCGTTCATTGCCAGCATGGACAACACCCAGACTAGCATACCAACTCGGCCTTCTGGATTCGCCGACTCGTTCACATCGGCCGATGGGAGGTGA 2865 0.4716 MTKKTHFRSRVFTLFLVFFPSIFLCVESQLNQGDVSIMLELKESLKSSTDLGWSDSDPCNWINVGCSFDKQRIARIQMKSLDLTGTLPASLRNLTGLQRLEFQGNKLSGPLPSLNGLSTLQALILTGNNFTSIPSDFFSGLSSLSEVRLDGIPFSAWTIPDSLQSATDLQNFSANSANIIGKIPDFFGGDVFPSLEELHLSFNSLEGGLPDSFSGLSAMQSLWLNGQKSSSKLNGSIEVLKNMTSLKEVWLNFNLFSGPLPDFSGLADLRGLTLRDNQFTGPVPESLLSLKSLNYVNLTNNLLQGPMPKFESSVAVDMNEDTNSFCKPTPGDCDPRVKTLLSIAKNMGYPAFFAENWKGNDPCVPWVGISCSKGNINVVNFQKMGLMGTISPDFSLLKSLQKLILANNSFIGSIPAELTTLTDLRELDVSNNQLSGKIPAFRSNVNVIINGNPNIRKEIDIPSPNTPPRSPPGPSSGGNPGTDNGSGSGGKKSSIPIGVVVGSVIGGVCVIFLVGLLGFCFYKRKQQRFGRVQSPNTMVIHPRHSGSDPEMVKITVAGSSVNGGTTSETYSRTSSGPSDIQVVEAGNMVISIQVLRNVTNNFSEENILGRGGFGTVYKGELHDGTKIAVKRMESGVVTEKGLTEFKSEIAVLTKVRHRHLVALLGYCLDGNERLLVYEYMPQGTLSHHLFNWKEEGLKPLEWTRRLSIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPDGKGSVETRLAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMEVITGRRALDETQPEESMHLVTWFRRMHINKDTFRKAIDPTIDLTEETLASVSTVAELAGHCCAREPYQRPDMGHAVNVLSSLVELWKPADPDSEDIYGIDLDMTLPQALKKWQAFEGNSHMDATPSFIASMDNTQTSIPTRPSGFADSFTSADGR* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01890 954 Gene3D Ribonuclease Inhibitor 31 333 IPR032675 -
Eupl04g01890 954 Gene3D Phosphorylase Kinase; domain 1 563 679 - -
Eupl04g01890 954 MobiDBLite consensus disorder prediction 932 954 - -
Eupl04g01890 954 FunFam receptor protein kinase TMK1 680 897 - -
Eupl04g01890 954 Pfam Protein kinase domain 603 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01890 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 727 739 IPR008271 GO:0004672|GO:0006468
Eupl04g01890 954 FunFam Receptor-like kinase TMK4 32 331 - -
Eupl04g01890 954 ProSiteProfiles Protein kinase domain profile. 602 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01890 954 PANTHER OSJNBA0070M12.3 PROTEIN 15 954 - -
Eupl04g01890 954 SMART LRR_typ_2 117 140 IPR003591 -
Eupl04g01890 954 SMART LRR_typ_2 421 443 IPR003591 -
Eupl04g01890 954 SMART LRR_typ_2 192 215 IPR003591 -
Eupl04g01890 954 MobiDBLite consensus disorder prediction 456 492 - -
Eupl04g01890 954 Pfam Leucine Rich Repeat 194 216 IPR001611 GO:0005515
Eupl04g01890 954 MobiDBLite consensus disorder prediction 476 491 - -
Eupl04g01890 954 Gene3D Transferase(Phosphotransferase) domain 1 680 894 - -
Eupl04g01890 954 SUPERFAMILY L domain-like 42 446 - -
Eupl04g01890 954 SMART serkin_6 602 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01890 954 ProSitePatterns Protein kinases ATP-binding region signature. 608 630 IPR017441 GO:0005524
Eupl04g01890 954 Pfam Leucine rich repeat N-terminal domain 33 67 IPR013210 -
Eupl04g01890 954 Pfam Leucine rich repeat N-terminal domain 338 372 IPR013210 -
Eupl04g01890 954 Gene3D Ribonuclease Inhibitor 335 459 IPR032675 -
Eupl04g01890 954 SUPERFAMILY Protein kinase-like (PK-like) 578 887 IPR011009 -
Eupl04g01890 954 FunFam receptor protein kinase TMK1 564 679 - -
Eupl04g01890 954 FunFam Leucine-rich repeat receptor-like kinase 335 458 - -
Eupl04g01890 954 CDD STKc_IRAK 608 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01890 Eupl-Chr4 43096708 43102218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01890 84 884 Receptor kinase-like Gene Family AT5G07280 31.448 3.51e-86 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Eupl04g01890 Pkinase 4.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01890 K00924 - nnu:104607283 1433.31