Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01887 ATGAGTTTGAAGATGCAGAGCCACCACTTGGTGGCGGTGAGGTTGAATGAGCACTTGGCAGTGAAACGGGTGAACAAATTTATTAACTTGACAAAAGGTCGGCTCCTCACGATGATACTACTATGGATTACGTTGATTTCCTGCAGCGCTGTGTGTATCTACAACAAGTTGGAGGCTGAGAACATGGTGAGAAGGAAGGACACTCTAGCTAGCATGTGTGATCAGCGCGCGAGGATGCTTCAGGATCAATTCAGCGTCAGCGTTAACCATGTTCATGCCCTTGCAATCCTCGTTTCTACCTTCCATTACTACAAGAATCCTTCTGCCATTGATCAGGCAACTTTTGCTGAGTACACAGCCAGGACAGCTTTTGAGCGGCCATTGCTGAGTGGGGTAGCATACGCACAGAGAGTGGTTGATTCGGAGAGGGAGAAATTTGAGAAGCGTCAGGGTTGGACAATTAAGACCATGGAGAGGGACCCTTCACCTGTTCGAGACGAATATGCTCCGGTGATATTCTCACAAGAGACTGTTTCCTACATCGAATCCCTTGATATGATGTCTGGCGAGGAGGACCGAGAGAACATTTTGAGGGCTAGGGCTACTGGAAAAGCTGTTCTTACCAGCCCCTTTAGGCTGCTGGGGTCTCATCATCTGGGTGTGGTTTTGACCTTCCCCGTTTACAGCTCCAATCTCCATGCGGATGCAACGGTGCAAGAACGCATTGAAGCTACTGCAGGATACCTTGGTGGAGCCTTTGATGTTGAGTCACTTGTGGAGAATTTGCTCGGGCGACTTGCTGGGAAGCAGGCAATTGTGGTGAATGTATATGATGTCACCAACTCTTCTGATCCTTTGATCATGTACGGACCTCAATATCCAGATGGTGACATGTCCCTTTTGCATGTCAGCATACTTGATTTTGGAGATCCATTCAGAAAGCACCAAATGAGATGTAGATATCTTCAAAATCCCCCCACTCCATGGATGGCAATCAATTTCTCGATTGGAATTTTTGTGATCTGTCTATTAGTAGGGTATATCTTCTATGGTGCGGGGATTCACATTGTCAAAATTGAGGACGACTTCCTTGCAATGCAGGAACTAAAGGTCCGAGCAGAAGCTGCCGATGTTGCCAAATCTCAGTTTCTAGCTACTGTTTCGCATGAGATCAGAACACCCATGAATGGTGTCCTTGGAATGCTAAGTTTGCTTCTAGATACAGATCTGGATTCAACCCAAAGGGATTTTGCTCAAACTGCTCAAGCCTGTGGGAAGGCACTGATAACATTGATAAACGAACTGCTTGACCGGGCAAAAATTGAAGCTTGCAAGTTAGAGCTAGAGGCAGTCCCTTTCGATCTACGATCCATCCTAGATGACGTTCTCTCCTTATTTTCTGGGAAGACTAGGGACAAGCGTATTGAGCTAGCTCTGTGCGTCTCTGATAAAGTTCCTGAAATTCTCGTCGGTGATCCGGGGAGATTCCGTCAGATTATAACAAATCTTGTGGGCAACTCTGTTAAATTTACTGAGCGGGGACATATATTTGTTCAAGTCCATCTAGCCGAAGACATAAATTCCGTGATGGATGCAAAAGCTGGAGCATGCTTGAAGAGAGGATCAGATGGGTTGGAAGTTATATCGGGTGGCAGTCAATTCAATACCTTAAGTGGATACGAAGCAGCTGATGACCGGAACAGTTGGGAAACTCTTAAGCTTCTAATTGCCAACGATGAGTTCCAGTCTGATGTTTCACATAACTGGATGACTGATGATGAAACTTCTGAGAATGTGACTTTGATAGTTAGTGTGGAGGATACAGGGATTGGGATCCCTTTACGTGCACAAGACAGGGTTTTCATGCCCTTTATGCAGGCAGACAGTTCGACCTCCAGGAATTATGGTGGAACTGGTATAGGCCTGAGCATCAGCAAGTGTCTGGTTGAGCTGATGGGTGGGCAGATAAACTTCATAAGCCGGCCTCAAATTGGAAGCACATTTACATTTACTGCTGTCTTGAGAAGAGGTGAGAAAAATGCACTTAATGATCTGGAAAGACCTCTTTCTGAGGTTCTGCCCACTGGTTTCAAAGGGATGAAAGCAATTGTAGTCGATGGAAAACCAGTTAGAGGTGTTGTAACAAAATACCATCTACAGAGACTTGGTATCCTGGTAGAACTTGCAAGTAGTCTCAAGGTTGCGTTTGGTGCAGTATCTGGACAAAATGGTTGTTTGAGATCTGGAAATGGAAAACAACCAGATATGATTCTAGTTGAGAAGGATTCCTGGATTTCTAGTGAGGATGGTGGATTGCATGAACGGTTATTGGACTCGAAACAGAATGGTTGCACAATTGAGCCAACCAAGCTGATTCTTCTTGCTACCTCTATTAGTACTGCAGAATCTGTTAAAGCAACGGCTGCAGGTTTTGCTGATACTGTGATCATGAAACCTTTGAGAGCAAGTATGGTTGCGGCATGCCTTCAACAGGTGCTGGGCATGGGGAACAGGAGGCGGCAAGGCAAGGAACTGCCCAATGGATCTGCTTTCCTTCACAGCCTTCTACATGGGAAAAATATATTGGTGGTTGATGACAATAAGGTGAACCGCAGAGTTGCTGCTGGTGCACTCATGAAGTTCGGAGCTAAGGTCAAGTGCGCTGATAGTGGGCGAGCTGCACTTGCCCTGCTTCAGTTGCCACACAATTTTGATGCTTGCTTCATGGACATTCAGATGCCGGAAATGGATGGGTTCGAGGCGACCCGGCTGATCCGGCAGATGGAGAGCAACTGGAATGAACAGATGAAGAGTGGAGGATCTGCTGCCAAGGTTGAGTGGCACATGCCAATATTAGCCATGACTGCTGATGTGATTCAGGCAACGTATGAAGAGTGCCTAAAATGTGGGATGGATGGTTATGTCACAAAGCCCTTCGAGGAAGCGAGTCTCTATCAGGCCGTTGCCAAGTTCTTTGAATCTAAACCCATCTCTGACTCGTAA 3003 0.4622 MSLKMQSHHLVAVRLNEHLAVKRVNKFINLTKGRLLTMILLWITLISCSAVCIYNKLEAENMVRRKDTLASMCDQRARMLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQATFAEYTARTAFERPLLSGVAYAQRVVDSEREKFEKRQGWTIKTMERDPSPVRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYSSNLHADATVQERIEATAGYLGGAFDVESLVENLLGRLAGKQAIVVNVYDVTNSSDPLIMYGPQYPDGDMSLLHVSILDFGDPFRKHQMRCRYLQNPPTPWMAINFSIGIFVICLLVGYIFYGAGIHIVKIEDDFLAMQELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLSLLLDTDLDSTQRDFAQTAQACGKALITLINELLDRAKIEACKLELEAVPFDLRSILDDVLSLFSGKTRDKRIELALCVSDKVPEILVGDPGRFRQIITNLVGNSVKFTERGHIFVQVHLAEDINSVMDAKAGACLKRGSDGLEVISGGSQFNTLSGYEAADDRNSWETLKLLIANDEFQSDVSHNWMTDDETSENVTLIVSVEDTGIGIPLRAQDRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFTFTAVLRRGEKNALNDLERPLSEVLPTGFKGMKAIVVDGKPVRGVVTKYHLQRLGILVELASSLKVAFGAVSGQNGCLRSGNGKQPDMILVEKDSWISSEDGGLHERLLDSKQNGCTIEPTKLILLATSISTAESVKATAAGFADTVIMKPLRASMVAACLQQVLGMGNRRRQGKELPNGSAFLHSLLHGKNILVVDDNKVNRRVAAGALMKFGAKVKCADSGRAALALLQLPHNFDACFMDIQMPEMDGFEATRLIRQMESNWNEQMKSGGSAAKVEWHMPILAMTADVIQATYEECLKCGMDGYVTKPFEEASLYQAVAKFFESKPISDS* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01887 1000 ProSiteProfiles Response regulatory domain profile. 701 833 IPR001789 GO:0000160
Eupl04g01887 1000 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 433 671 IPR036890 -
Eupl04g01887 1000 Gene3D - 854 999 - -
Eupl04g01887 1000 Pfam His Kinase A (phospho-acceptor) domain 379 443 IPR003661 GO:0000155|GO:0007165
Eupl04g01887 1000 ProSiteProfiles Response regulatory domain profile. 860 992 IPR001789 GO:0000160
Eupl04g01887 1000 Gene3D - 444 679 IPR036890 -
Eupl04g01887 1000 SUPERFAMILY CheY-like 695 840 IPR011006 -
Eupl04g01887 1000 PANTHER TWO-COMPONENT HISTIDINE KINASE 29 989 - -
Eupl04g01887 1000 SMART HisKA_10 379 444 IPR003661 GO:0000155|GO:0007165
Eupl04g01887 1000 CDD HATPase_EvgS-ArcB-TorS-like 496 674 - -
Eupl04g01887 1000 CDD HisKA 379 440 IPR003661 GO:0000155|GO:0007165
Eupl04g01887 1000 Pfam Response regulator receiver domain 861 988 IPR001789 GO:0000160
Eupl04g01887 1000 SMART REC_2 859 988 IPR001789 GO:0000160
Eupl04g01887 1000 SMART HKATPase_4 491 676 IPR003594 -
Eupl04g01887 1000 SUPERFAMILY CheY-like 857 992 IPR011006 -
Eupl04g01887 1000 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 365 443 IPR036097 GO:0000155|GO:0007165
Eupl04g01887 1000 ProSiteProfiles Histidine kinase domain profile. 386 676 IPR005467 -
Eupl04g01887 1000 Pfam CHASE domain 109 289 IPR006189 -
Eupl04g01887 1000 Gene3D - 57 109 - -
Eupl04g01887 1000 ProSiteProfiles CHASE domain profile. 106 318 IPR006189 -
Eupl04g01887 1000 Gene3D CHASE domain 110 325 IPR042240 -
Eupl04g01887 1000 SMART CHASE_2 106 291 IPR006189 -
Eupl04g01887 1000 PRINTS Bacterial sensor protein C-terminal signature 619 629 IPR004358 GO:0016310|GO:0016772
Eupl04g01887 1000 PRINTS Bacterial sensor protein C-terminal signature 601 615 IPR004358 GO:0016310|GO:0016772
Eupl04g01887 1000 PRINTS Bacterial sensor protein C-terminal signature 636 654 IPR004358 GO:0016310|GO:0016772
Eupl04g01887 1000 PRINTS Bacterial sensor protein C-terminal signature 660 673 IPR004358 GO:0016310|GO:0016772
Eupl04g01887 1000 FunFam Histidine kinase 4 351 442 - -
Eupl04g01887 1000 FunFam Histidine kinase 4 110 325 - -
Eupl04g01887 1000 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 491 674 IPR003594 -
Eupl04g01887 1000 Gene3D - 356 442 - -
Eupl04g01887 1000 CDD REC_hyHK_CKI1_RcsC-like 861 988 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01887 Eupl-Chr4 42980970 43016764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01887 9 1000 Histidine Kinase Gene Family AT2G01830 66.965 0.0 1311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Eupl04g01887 HATPase_c 1.7e-33 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01887 K14489 - psom:113303143 1527.69