Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01884 ATGAAAACACTGAATTCTGATTTTGAAGCGGAGGCCCTGTCAGAAGATGAATCAGATGTCAGCAGTCAAGTTGCTTCCAATATATCGATCCAAGAAACCTCTCCAGATCCTCTCAAGGACACCACTACCACCTCCTCCTGCCTTACAAATCTCATAAATCTTCAACCGGATCCTGGGTCAGTCTCTCTTGATCTAACTCTCAGCTTCCAAACCTGCGATGGCGAGTTGGGGGGCAGAAAGGAGTCAGTGGGACTCTCATTATCTAGCACGAGTGAGAGTAGCAGTGAAGCTGCTGCCCGCATTCCACCATCCGCTGTCCCAAGAATTTTCTCTTGCAACTACTGTCAGCGCAAGTTCTTCAGCTCGCAGGCTCTGGGTGGTCACCAAAACGCTCACAAGAGGGAGAGGACACTCGCAAAGCGAGCCATGCGGATGGGCATCTTCTCTGAGAGGTATGCAAGCTTGGCTTCTCTACCCCTACACGGGTCCACGAGCCGGTCCCTAGGGATCAAAGCTCACTCATCAGTGCACCACAACATTCCACCACTGGAGAGGCTCCCTGAGATTAGGGGTTGTGCAAGGTTTGATCATGGCTACCTCGGGTTTCCAGTGTTCATGGAGGACGATGAGGCAGAGCTGTTCTGGCCTGGGAGTTTTCGACAGGTGGCTGAGGGAGGTGGTGGTCATCCAGGTTTTGAATTGGCAGGAAGTATGAATTTGAATTTTGCAGCGGCGGCTCCACCGCCAGAGACAGATTCATCCACACCGGATCTTACACTGAGACTTTGA 789 0.5171 MKTLNSDFEAEALSEDESDVSSQVASNISIQETSPDPLKDTTTTSSCLTNLINLQPDPGSVSLDLTLSFQTCDGELGGRKESVGLSLSSTSESSSEAAARIPPSAVPRIFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGIFSERYASLASLPLHGSTSRSLGIKAHSSVHHNIPPLERLPEIRGCARFDHGYLGFPVFMEDDEAELFWPGSFRQVAEGGGGHPGFELAGSMNLNFAAAAPPPETDSSTPDLTLRL* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01884 262 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 20 184 IPR044246 GO:0009788
Eupl04g01884 262 Gene3D Classic Zinc Finger 104 156 - -
Eupl04g01884 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Eupl04g01884 262 MobiDBLite consensus disorder prediction 1 42 - -
Eupl04g01884 262 MobiDBLite consensus disorder prediction 17 42 - -
Eupl04g01884 262 FunFam Zinc finger protein 2 87 156 - -
Eupl04g01884 262 SUPERFAMILY beta-beta-alpha zinc fingers 108 137 IPR036236 -
Eupl04g01884 262 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01884 Eupl-Chr4 42702531 42715911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01884 93 262 C2H2 Transcription Factor Family AT1G66140 48.969 9.37e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl04g01884 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01884 - - ming:122079412 364.77