Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01883 ATGGCGGACGATAAGAACGGCAGCGTCGTCTCAACTGAGAAACCGCCGGAAGTGAAGCGTTCTTGGGGCGATGAAGTAGACGAAATCGACGATGAACCGACCTCTTCGACGTCCGTCGATAAAGTTCCGGAGCAGAGCCTTCAGTCGCTAACGATCGACGAAAACAAAAATACTAACAAATTTCTAGACGAACCAGAAGATTCAAACATCAAAGCAGTTACTTCGGGCGATACCCTGTATTCTACTGCAGCGACATTTGAGGATTTGAAACTGTCTCCGGATTTGTTAAAGGGGCTGTATGTCGAAATGAAATTTAATCGACCTAGTAAGATCCAGTCGATAAGTTTGCCCATGATCTTGACTCCACCATACAGGGATCTGATTGCTCAAGCGCATAACGGTTCTGGTAAGACCACTTGTTTTGTGCTTGGGATGTTGAGTCGCGTCGATCCCAATCTGAAAGCACCTCAAGCGCTTTGCATTTGCCCTACGAGAGAACTGGCGATCCAGAATCTGGAAGTTCTGAAGAAGATGGGCAAGTACACGGGAATAAGTTCAACTTGTGCTATACCTATGGATAGGAGTAACGATCTTCCGATTGCAAAGCGATTACCGATCACGGATCAAATAGTTATCGGAACCCCAGGCACGATTAAAAAGTGGATGTCGTTCAAGAAATTGAGCACGAGGGAGGTGAAGATACTTGTCTTCGATGAAGCTGATCACATGTTGGCGGAGGATGGCTTTAAAGATGATTCTTTGAGGATCATGAAGGATATTGAAAGAAGCAGTGCACATTGCCAGGTGCTTCTATTTTCTGCTACTTTTAACGAGACTGTCAAGAATTTTGTTTCAAGGGTGGTTAGAGACGGAAATCAACTGTTTGTGAAGAAAGAAGACTTATCACTGGATGCAGTTAAGCAGTATAAGGTGTACTGCCCAGATGAACAAGCCAAGATAGATGTCATTAAGGACAAGATTTTTGAATTAGGAGGGAAGTTGGGACAGACTATTATATTTGTCCACTCAAGGAATAGTGCTAGTGCGTTGCATACATCACTGGTAAGTTATGGTTACGGATGTACTACTATTCATGGTGCTATTGAGAAAGATGACAGGGACAAGATAGTCAAGGAGTTCAAAGATGGATTAACTAAAGTTCTCATATCAACGGATCTTCTTGCTCGAGGTTTCGATCAATCACAGGTTAATTTGGTCGTCAATTACAATCTTCCGGTCAAACATGATACTCCATCGGAACCTGATTATGAGGTTTACTTGCATAGGTGTGGTAGAGCAGGACGTTTTGGTCGCAAGGGGGCCGTGTTCAACTTGCTGTGTACAAGTAAGGACCAAATGTTGATGGAGAAGATTGAGAAGCATTTTGGGAATCAAGTAGTGGAGGTGCCTGATTGGAAAAGCGAAAATGATTTCGAAGCAGCTCTGAAGACAGCTGGTCTGCTATAA 1467 0.4363 MADDKNGSVVSTEKPPEVKRSWGDEVDEIDDEPTSSTSVDKVPEQSLQSLTIDENKNTNKFLDEPEDSNIKAVTSGDTLYSTAATFEDLKLSPDLLKGLYVEMKFNRPSKIQSISLPMILTPPYRDLIAQAHNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLKKMGKYTGISSTCAIPMDRSNDLPIAKRLPITDQIVIGTPGTIKKWMSFKKLSTREVKILVFDEADHMLAEDGFKDDSLRIMKDIERSSAHCQVLLFSATFNETVKNFVSRVVRDGNQLFVKKEDLSLDAVKQYKVYCPDEQAKIDVIKDKIFELGGKLGQTIIFVHSRNSASALHTSLVSYGYGCTTIHGAIEKDDRDKIVKEFKDGLTKVLISTDLLARGFDQSQVNLVVNYNLPVKHDTPSEPDYEVYLHRCGRAGRFGRKGAVFNLLCTSKDQMLMEKIEKHFGNQVVEVPDWKSENDFEAALKTAGLL* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01883 488 SMART ultradead3 104 309 IPR014001 -
Eupl04g01883 488 Pfam DEAD/DEAH box helicase 110 282 IPR011545 GO:0003676|GO:0005524
Eupl04g01883 488 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 81 457 - -
Eupl04g01883 488 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 477 IPR001650 -
Eupl04g01883 488 MobiDBLite consensus disorder prediction 1 64 - -
Eupl04g01883 488 CDD DEADc_DDX19_DDX25 91 294 - -
Eupl04g01883 488 Gene3D - 63 300 IPR027417 -
Eupl04g01883 488 MobiDBLite consensus disorder prediction 36 56 - -
Eupl04g01883 488 CDD SF2_C_DEAD 306 446 - -
Eupl04g01883 488 Gene3D - 301 476 IPR027417 -
Eupl04g01883 488 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 294 IPR014001 -
Eupl04g01883 488 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 84 113 IPR014014 GO:0003724
Eupl04g01883 488 SMART helicmild6 348 437 IPR001650 -
Eupl04g01883 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 455 IPR027417 -
Eupl04g01883 488 Pfam Helicase conserved C-terminal domain 324 437 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01883 Eupl-Chr4 42669456 42694968 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01883 85 470 Eukaryotic Initiation Factors Gene Family AT1G72730 36.061 1.88e-68 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01883 K18655 - nnu:104604617 781.941