Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01874 ATGGCGGACGATAAGAACGGCAGCGTCGTCTCAACTGAGAAACCGCCGGAAGTGAAGCGTTCTTGGGGCGATGAAGTAGACGAAATCGACGATGAACCGACCTCTTCGACGTCCGTCGATAAAGTTCCGGAGCAGAGCCTTCAGTCGCTAACGATCGACGAAAACAAAAATACTAACAAATTTCTAGACGAACCAGAAGATTCAAACATCAAAGCAGTTACTTCGGGCGATACCCTGTATTCTACTGCAGCGACATTTGAGGATTTGAAACTGTCTCCGGATTTGTTAAAGGGGCTGTATGTCGAAATGAAATTTAATCGACCTAGTAAGATCCAGTCGATAAGTTTGCCCATGATCTTGACTCCACCATACAGGGATCTGATTGCTCAAGCGCATAACGGTTCTGGTAAGACCACTTGTTTTGTGCTTGGGATGTTGAGTCGCGTCGATCCCAATCTGAAAGCACCTCAAGCGCTTTGCATTTGCCCTACGAGAGAACTGGCGATCCAGAATCTGGAAGTTCTGAAGAAGATGGGCAAGTACACGGGAATAAGTTCAACTTGTGCTATACCTATGGATAGGAGTAACGATCTTCCGATTGCAAAGCGATTACCGATCACGGATCAAATAGTTATCGGAACCCCAGGCACGATTAAAAAGTGGATGTCGTTCAAGAAATTGAGCACGAGGGAGGTGAAGATACTTGTCTTCGATGAAGCTGATCACATGTTGGCGGAGGTAGTTACTCTTTTTCGTTTTTGTTCGAGTTCAGTGTTATTCTGTGTCGTGATCATTTTGGGATATGTAATCCATGCTTTTTATGCTTCAATGAAACATAGGTTTATAGTTTGA 852 0.4448 MADDKNGSVVSTEKPPEVKRSWGDEVDEIDDEPTSSTSVDKVPEQSLQSLTIDENKNTNKFLDEPEDSNIKAVTSGDTLYSTAATFEDLKLSPDLLKGLYVEMKFNRPSKIQSISLPMILTPPYRDLIAQAHNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLKKMGKYTGISSTCAIPMDRSNDLPIAKRLPITDQIVIGTPGTIKKWMSFKKLSTREVKILVFDEADHMLAEVVTLFRFCSSSVLFCVVIILGYVIHAFYASMKHRFIV* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01874 283 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 60 245 - -
Eupl04g01874 283 Pfam DEAD/DEAH box helicase 110 246 IPR011545 GO:0003676|GO:0005524
Eupl04g01874 283 Gene3D - 62 263 IPR027417 -
Eupl04g01874 283 MobiDBLite consensus disorder prediction 1 64 - -
Eupl04g01874 283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 246 IPR027417 -
Eupl04g01874 283 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 251 IPR014001 -
Eupl04g01874 283 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 84 113 IPR014014 GO:0003724
Eupl04g01874 283 SMART ultradead3 104 272 IPR014001 -
Eupl04g01874 283 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01874 Eupl-Chr4 42562100 42563469 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01874 85 263 Eukaryotic Initiation Factors Gene Family AT3G19760 32.065 1.23e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01874 K18655 - nnu:104604617 387.882