Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01836 ATGCGGCGTGGAAATCGTGAGAAAGATGAACAAGATGAGAAGGAGTTCGAGTTGGAGGAGCTGAGGGATCATATTATTTCGTCTCGAGGAAGTCGATTCAATTTGATAACGAACGAGTTACGATTGGATTGGTCTCGGAAAGGAATCAGTCGAGAAAGCGTTATTAATGGAATTAAGGGCTTCTACATTCATCCCGACAACAAGTGGTATCAGGCGTGGACGCAGTTCATACTGATATGGGCAGTGTACTCGTCCTTCTTCACTCCTGTGGAGTTCGGATTCTTCAGGGGTTTGCCCAAGGACCTCGTCTTCCTCGACATCGCGGGACAAGTGGCTTTCCTCATCGACATCGTCGTCCAGTTCTTCGTCGCTTACAGAGACAGCCAGACTTATCTTATGGTCTATAAGCGAACCCCTATTGCCCTCCGGTACTTGAAATCGAGTTTCATTGTTGATCTTCTCGGTTGTTTACCTTGGGATGCTATCTACAGGGCCTTTGGGAGAAAAGAAGAAGTGAGGTACCTTTTGTGGATTAGGTTGAGTCGAGTGCGCAGAGGGACAGATTTTTTTCAGAAGATGGAAAAGGACATCCGCATCAGTTACATGTTTACCAGGATTGTTAAACTTCTTGCTGTTGAACTCTATTGCACACATACGGCTGCCTGCATCTTTTACTATTTGGCAACCACTCTGCCTCCTTCTAAAGAAGGGTATACATGGATAGGAAGTTTAAAATTGGGTGACTACAGTTATTCAAACTTCAGAGATCTTGATCTTGGAAAGCGGTACTTGACATCACTATATTTTGCCATTGTCACCATGGCAACTGTTGGTTATGGAGATATACACGCAGTCAATATCAGGGAAATGATATTCATCATGATTTATGTTTCCTTTGACATGATTCTTGGAGCTTATCTAATTGGTAACATGACAGCACTAATTGTAAAAGGATCAAAGACAGAAAAGTTTAGGGATAAAATGACAGATCTGATCAAATATATGAATAGAAACAAACTTGAAAAGGATATTCGTAGCCAGATCAAAGGTCATGTGCGCTTACAGTATGAGAGCAGCTACACTGAGGCTGCTGTTCTTCAGGATATTCCAGTTTCTATTCGTGCTAAGATTTCACAAACGTTATATAAGGCATATATTGAGAAGGTTTCTCTTTTTAAAGGATGCTCACCGGAATTGATCAATCAGATTGTAATCAGAGTTCATGAGGAATTTTTTCTCCCAGGAGAAGTGATTATGGAACAAGGCAATGTAGTAGATCAACTTTATTTTGTTTGTCATGGTGTGGTGGAAGAGGTAGGCATAGGGGAAGATGGATCAGAAGAGACTATCGTACTGCATCCTAACAGCTCGTTCGGGGAACTTTCCATTCTTTGCAATATTCCTCAGCCTTACACAGTTCGTGTTTGTGAACTATGTAGGCTCCTGCGACTTGATAAGCAATCTTTTACAAATATCCTAGATATTTACTTTTTGGATGGGCGTACAATCTTGAGCAATCTTCTGGAGGGAAAAGATTCTAATATTCGTATAAAGCAATTGGAATCTGAGATCACATGTCATATCGGAAAGCAAGAAGCTGATCTCGCTTTGAGGGTGAACAGTGCTGCTTATCATGGAGATTTGTATCTGCTGAAGGATTTGATTCGAGCTGGAGCAGATCCCAAAAAGACAGATTATGATGGAAGGTCGCCTTTGCATCTTGCGGCATCAAGAGGATACGAAGATATTACGCTTTTCCTTATTCAGAAAGGTGTGGACATTAACATTTCAGATAAATTCGGAAACACTCCCTTATACGAAGCCATCAAGAACGGTTATGATCGAGTGGCTTCTTTACTTGTCAAGGAAGGAGCATCGCTAAATATTGATGATGCTGGTAGTTGTCTCTGTATGGCTGTGGCAAGGGGGGATTCAGATTTCCTGAAAAGGGTTTTGTCCAATGGCATTGATCCAAACTCCAAAGATTATGATCACCGAACACCGCTTCATGTAGCTGCTGCAGAAGGGTTATATTTGATGGCAAAATTGCTGTTAGAAGCTGGGGCAAATGTCTTCTCAAAGGACAGATGGGGAAACACTCCACTTGATGAAGGCCGTATGTGTGGAAACAAGAACTTGATTAAGCTATTGGAAGGCGCAAAATCTGCTCAGTTGTCCGAAATCCGTGATTACTCTCAAGAAATCGAAGATAAAATGCATCCAAGGAAATGTACGGTGTATCCCTTCCACCCATGGGATCCCAAGGAGAAAAAAAGACAAGGAGTCATGTTATGGGTCCCACACACCATGGACGACCTCGTAAATATGGCAGCAGAGCAACTAAAATGCTCAGGTGCTTCTTGCATTGTATCAGAAGATGTGGGTAAAATCCTTGATGTAAACATGATTTATGATGGTCAGAAATTGTATTTGGTTGATGAAACTCATTAG 2451 0.4178 MRRGNREKDEQDEKEFELEELRDHIISSRGSRFNLITNELRLDWSRKGISRESVINGIKGFYIHPDNKWYQAWTQFILIWAVYSSFFTPVEFGFFRGLPKDLVFLDIAGQVAFLIDIVVQFFVAYRDSQTYLMVYKRTPIALRYLKSSFIVDLLGCLPWDAIYRAFGRKEEVRYLLWIRLSRVRRGTDFFQKMEKDIRISYMFTRIVKLLAVELYCTHTAACIFYYLATTLPPSKEGYTWIGSLKLGDYSYSNFRDLDLGKRYLTSLYFAIVTMATVGYGDIHAVNIREMIFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLIKYMNRNKLEKDIRSQIKGHVRLQYESSYTEAAVLQDIPVSIRAKISQTLYKAYIEKVSLFKGCSPELINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVVEEVGIGEDGSEETIVLHPNSSFGELSILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFLDGRTILSNLLEGKDSNIRIKQLESEITCHIGKQEADLALRVNSAAYHGDLYLLKDLIRAGADPKKTDYDGRSPLHLAASRGYEDITLFLIQKGVDINISDKFGNTPLYEAIKNGYDRVASLLVKEGASLNIDDAGSCLCMAVARGDSDFLKRVLSNGIDPNSKDYDHRTPLHVAAAEGLYLMAKLLLEAGANVFSKDRWGNTPLDEGRMCGNKNLIKLLEGAKSAQLSEIRDYSQEIEDKMHPRKCTVYPFHPWDPKEKKRQGVMLWVPHTMDDLVNMAAEQLKCSGASCIVSEDVGKILDVNMIYDGQKLYLVDETH* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01836 816 Pfam Ankyrin repeats (3 copies) 542 631 IPR002110 GO:0005515
Eupl04g01836 816 Pfam Ankyrin repeats (3 copies) 636 717 IPR002110 GO:0005515
Eupl04g01836 816 CDD CAP_ED 391 504 IPR000595 -
Eupl04g01836 816 ProSiteProfiles KHA domain profile. 743 816 IPR021789 -
Eupl04g01836 816 FunFam Potassium channel SKOR 71 316 - -
Eupl04g01836 816 Gene3D Jelly Rolls 377 505 IPR014710 -
Eupl04g01836 816 SUPERFAMILY cAMP-binding domain-like 319 507 IPR018490 -
Eupl04g01836 816 FunFam Gated outwardly-rectifying K+ channel 606 732 - -
Eupl04g01836 816 ProSiteProfiles Ankyrin repeat region circular profile. 600 631 - -
Eupl04g01836 816 ProSiteProfiles Ankyrin repeat profile. 600 632 IPR002110 GO:0005515
Eupl04g01836 816 Gene3D Helix hairpin bin 318 376 - -
Eupl04g01836 816 Pfam Cyclic nucleotide-binding domain 411 494 IPR000595 -
Eupl04g01836 816 Pfam KHA, dimerisation domain of potassium ion channel 742 811 IPR021789 -
Eupl04g01836 816 Pfam Ion transport protein 71 316 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Eupl04g01836 816 Gene3D - 633 727 IPR036770 -
Eupl04g01836 816 PRINTS Ankyrin repeat signature 680 694 IPR002110 GO:0005515
Eupl04g01836 816 PRINTS Ankyrin repeat signature 568 583 IPR002110 GO:0005515
Eupl04g01836 816 ProSiteProfiles Ankyrin repeat profile. 567 599 IPR002110 GO:0005515
Eupl04g01836 816 SMART ANK_2a 664 693 IPR002110 GO:0005515
Eupl04g01836 816 SMART ANK_2a 534 563 IPR002110 GO:0005515
Eupl04g01836 816 SMART ANK_2a 600 629 IPR002110 GO:0005515
Eupl04g01836 816 SMART ANK_2a 567 596 IPR002110 GO:0005515
Eupl04g01836 816 SMART ANK_2a 631 660 IPR002110 GO:0005515
Eupl04g01836 816 ProSiteProfiles Ankyrin repeat region circular profile. 567 599 - -
Eupl04g01836 816 FunFam Potassium channel KAT2 379 514 - -
Eupl04g01836 816 Gene3D - 72 317 - -
Eupl04g01836 816 SMART cnmp_10 391 508 IPR000595 -
Eupl04g01836 816 ProSiteProfiles Ankyrin repeat region circular profile. 664 696 - -
Eupl04g01836 816 SUPERFAMILY Ankyrin repeat 497 719 IPR036770 -
Eupl04g01836 816 PANTHER POTASSIUM CHANNEL AKT1 51 813 IPR045319 GO:0005249|GO:0006813
Eupl04g01836 816 SUPERFAMILY Voltage-gated potassium channels 64 316 - -
Eupl04g01836 816 PRINTS EAG/ELK/ERG potassium channel family signature 106 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Eupl04g01836 816 PRINTS EAG/ELK/ERG potassium channel family signature 263 280 IPR003938 GO:0005249|GO:0006813|GO:0016020
Eupl04g01836 816 PRINTS EAG/ELK/ERG potassium channel family signature 307 316 IPR003938 GO:0005249|GO:0006813|GO:0016020
Eupl04g01836 816 PRINTS EAG/ELK/ERG potassium channel family signature 215 225 IPR003938 GO:0005249|GO:0006813|GO:0016020
Eupl04g01836 816 Gene3D - 531 632 IPR036770 -
Eupl04g01836 816 ProSiteProfiles Ankyrin repeat profile. 664 696 IPR002110 GO:0005515
Eupl04g01836 816 ProSiteProfiles cAMP/cGMP binding motif profile. 391 493 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01836 Eupl-Chr4 40503246 40571610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01836 639 720 Ion Channels AT5G37500 33.962 6.27e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01836 K21867 - nnu:104607300 1304.66