Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01834 ATGATGATGGGAGAATCATCGATCGACAACGATACTTCCCTTCCGCCATTTCTCACAAAATGCTATGAAATGGTAGAAGATCCCGCCACCAACCCGATCATTTCATGGAGTCCAACAGATGACAGCTTTGTTATCTGGGATATGACTGCGTTTCAGCGAGAGCTGCTCCCCAGATACTTCAAGCACAGCAATTTCTCTAGTTTCATGAGGCAGCTCAACACATATGGTTTCAGAAAATCTGATCCAGATCGCTGGGAATTTGCAAACGATGGATTTATCAAGGGTCAAAAGCATTTGTTGAGAAATATCAGTAGAAGGAAACATACTCAGGGCCTTGGTCAACAGAAACAGTCCGAGCAAAAGAATACGCCCGTTGGAGCATGCGTGGAAGTTGGGAAGTTTGGTCTTCGCGAAGAAGTTGAGAGTCTTAAGAGGGATAAGAATGTGCTCATGCAGGAGTTGGTTAAACTCAGGCAGTACCAGCACGGTGCAGATGGTAAGTTGCACTGCTTGAGACGACGCCTTCATGGAATGGAAAAAAACCAGCAACAGATGTTGTCATTATTGGCAATGGCTGTGCAGAGCCCTGGGTTTTTAGCTCAGCTGCTGCAGCAGAATGAAAACAACTGGCGCTTAGCCAAGACAAGCAAAAAGAGACGACTTCCTGCTCTGGAACAAAATTCAGAGAGAGATGAACCTATAGCTTCTGATGGTCAGATAGTGAGGTACCAGCCTCTGATAAATGAGACCCCAGAGACTCTACTCATACCAATCACAAATACAGATGTATCTCCACAACTGGATCCTTCTCCAAATATGTTGGATGATTTCTTTATGAATATTGATTTCATGTCATTTGGGGAGGGTGTGCCATTGCCAATGGAAAAAAACTTGTCCTCAGAAAACGATGGCCCATTTATCCTCCCAGATTTGCACGAAGATGGTATGTTGGAGCAGCTTCTTCTGGCTAGTCCATTCTTAGAGAATATTGAAGAAACCGAGGGGAATACCTCGGAGACTGTGGAAAGTGGAATGGAGCTGGAATCAACTAACCATGATTCTCAGATGGAAACATCTCAAACCTTGGACCTTCTGATGGAAAAAATGGAGCTTCTAGCTTCTGAAAAAAGCCACATGCACGGAACACCATAG 1152 0.4444 MMMGESSIDNDTSLPPFLTKCYEMVEDPATNPIISWSPTDDSFVIWDMTAFQRELLPRYFKHSNFSSFMRQLNTYGFRKSDPDRWEFANDGFIKGQKHLLRNISRRKHTQGLGQQKQSEQKNTPVGACVEVGKFGLREEVESLKRDKNVLMQELVKLRQYQHGADGKLHCLRRRLHGMEKNQQQMLSLLAMAVQSPGFLAQLLQQNENNWRLAKTSKKRRLPALEQNSERDEPIASDGQIVRYQPLINETPETLLIPITNTDVSPQLDPSPNMLDDFFMNIDFMSFGEGVPLPMEKNLSSENDGPFILPDLHEDGMLEQLLLASPFLENIEETEGNTSETVESGMELESTNHDSQMETSQTLDLLMEKMELLASEKSHMHGTP* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01834 383 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl04g01834 383 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl04g01834 383 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl04g01834 383 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl04g01834 383 MobiDBLite consensus disorder prediction 334 358 - -
Eupl04g01834 383 Gene3D - 9 107 IPR036388 -
Eupl04g01834 383 FunFam Heat shock transcription factor 1 10 107 - -
Eupl04g01834 383 SUPERFAMILY "Winged helix" DNA-binding domain 13 106 IPR036390 -
Eupl04g01834 383 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl04g01834 383 Coils Coil 133 160 - -
Eupl04g01834 383 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 236 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01834 Eupl-Chr4 40413062 40435071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01834 6 250 HSF AT4G17750 57.854 1.14e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Eupl04g01834 HSF_DNA-bind 7.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01834 K09419 - ming:122064718 478.789