Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01780 ATGATGATGGCCTCAACAATCCCACCCAACTTTAGATTGAAGCTTCCCCATAGCCAACGGCTCACGATGACCCTCCAGGAGGACACCCTAGTCGGAACAACCTCCTCCTCATTACCCTTCCATCACCACCGCCACCACAACCACCAGCAGCAGCAGCAGCTCATCCGCATTCGCAAGCCCCGGTCTGCCCGTCGTTTACTCCTCAGCCGTGTTAGCAACGACAGTGGTGGCGGTGCCGTCGACGCTACCCCACAACACTCCGCGCCTTCTGAGATTGAGGCATTCAAGAGCAGCTCTCCTAGTTCTGGAGATGGTTACGTGGCTTTGTTTGTTCGGATGCTCGGGTTGGACAATGATACTCTTGACAGGGAGCAGGCAATCGTTGCACTGTGGAAATATTCACAAGGAGGGAAGCACTGTATTGATGGGATTATGCAATTTCGTGGTTGCATCAATCTTACTATTAACCTTCTAAAATCAGATTCGACTTCCACATGTGAAGCAGCTGCAGGACTTTTACGAACTGTATCTTCAATTAACCTGTACAGAGACTCAGTGGCAGAAAGTGGAGCAATAGAAGAAATAACTGCTCTTCTGAGTCGATCATCTCTGACAGCAGAGGTAAAGGAGCAAAGTATCTGTACTTTGTGGAACTTATCTGTTGACGAGAAGCTTAGATTGAAGATTGCAAACACTGATCTCCTGCCAGCACTTATAAAGTTCCTTGATGATGAGGAAATAAAGGTAAAAGAGGCAGCAGGGGGGGTATTGGCAAATTTAGCTTTGAGCCATTCGAACCACAACATCATGGTTGAAGCAGGTGCTATTCTGAAGCTGGCAAAGCTCTTAAAAAGCGATGTAGAAGGATCTAAAGTAATTAAAAAAGAAGCAAAAAATGCATTGTTGGAACTCGCGAAAGATGAATACTATAGAATTCTCATCATGGAGGAGGGTCTGGTTTTAGTCCCCATAATTGGGGCAGATGCCTTTAAGTCCTTCAGGTCGGTTTCACATTCATGGCCTTCTTTACCCGATGGTATAGAGTTTGAATGGAGTTCATCAACTCCTTCAAGGTATGGTGCCTCTGAACTGCTCCTTGGATTAAATATCCGTGACAAGAGCATTAATATGGAGGAAACCAAGATGAATGCAATAGTTGGACGTACACAACAGCAATTTCTTGCACGTATTGGGGCTATAGAATTGGAAGATGGGAGAAAAACTCGATCAGAATCCTCAACTGATCAGCGATATACTCTGTTGCCGTGGATGGATGGTGTTGCTCGCTTAGTTTTGATTCTTGAACTTGAAGATGTGTCAGCCATTTCAAGAGCTGCACAATCAATTGCAGATGCATCTATCAATGAACATATGCGGATCTCATTCAAGGAAGCTGGGGCAGTCAAGCATCTAGTTCGACTGCTAAACCATAACAATGAGAATGTTAGATTGGCTGTATCTCATGCTCTGGAGAGGCTCACTGTCAGCAATGATGTTTGTCATAAAATTGAAGCAGAAGGTGTTGTATATCCTCTGGTTAATGCTCTGAAGGACACAGCAATGTCAGAAAGCCTGATGGAAAAGATTATGAATATTCTTGCTCGGATTTTAGACCCTGGTAAAGAAATGAAATTGAAGTTTTATGATGGACCAGTTAATGGGTCAGAGAGGGCGTTGAATGCAACAAGAAGTGCTGATATTATTACAGGATTAGCTGGAAACACAGATGACCCAAAAGTATCAAAAGCAACTATTAGGGAAAATGTATTAGACTCTGGTGTTATTTCTCGCCTCATTGACATTCTGAGGACATCATCTCCATATTTGCAAAGAAAAGCTGCTTCCATCCTTGAGTACATATCAATTATTGAACCTTGCATGGGCACAATCATTGCAGCGGATATTGAATCTGGATTGGATGCTGTTTTCCAACAAATAGTTTTGAAAGACATAGAAGATGGCATAGACAGTCAGCAGCCAGAGCTAAATGCCCTAGAAGCTGAAGAAGCTGGTCTCGCAATATCTGCAGCATCCCGGTTGTTGACAAAGCTGTTAGATTTTGAGCAGTTTCGTCATGCCATAAATTCCACCCATTTCACGCAAGTGCTGCGTACTGTAGTGAAGTCGGATATCCCTCTTCACCACAAAGATTGGGTTGCTGCAAGCCTTGTTAAACTTGAGTCTTCATCCGGTTCCCATGTAGGTCCCGAGAACCCTATAAACATGGAGGTAACTCTTTATGAGACAATTCCTAGGCTAATTGAACAGACTAGGACCTCTTTCTCTCCAGAAGCACAAGAAGCTGCCGTCATAGAACTAAACTCTATACTCTCTAAAGGAGTGGTAGATTACACTAGAGTGGTCGCTGCTCAGGGAGGGATATTCCCACTGGTGAAGGTAATTGAAGAGGGGAGCGGGAAGGCTGTTGAAGCTAGCTTAGCCATCCTATTTAACCTAAGCATGGACAGTGAGAATCATTTGACCATTATTGCTGCTGGAGCAGTTCCTGCATTGAGGAAGATTGTTTACTCACAAAGGCCACAGTGGATGCGAGCGCTTCATTTGCTGAGGACTTTACCAACACGGTGA 2589 0.4426 MMMASTIPPNFRLKLPHSQRLTMTLQEDTLVGTTSSSLPFHHHRHHNHQQQQQLIRIRKPRSARRLLLSRVSNDSGGGAVDATPQHSAPSEIEAFKSSSPSSGDGYVALFVRMLGLDNDTLDREQAIVALWKYSQGGKHCIDGIMQFRGCINLTINLLKSDSTSTCEAAAGLLRTVSSINLYRDSVAESGAIEEITALLSRSSLTAEVKEQSICTLWNLSVDEKLRLKIANTDLLPALIKFLDDEEIKVKEAAGGVLANLALSHSNHNIMVEAGAILKLAKLLKSDVEGSKVIKKEAKNALLELAKDEYYRILIMEEGLVLVPIIGADAFKSFRSVSHSWPSLPDGIEFEWSSSTPSRYGASELLLGLNIRDKSINMEETKMNAIVGRTQQQFLARIGAIELEDGRKTRSESSTDQRYTLLPWMDGVARLVLILELEDVSAISRAAQSIADASINEHMRISFKEAGAVKHLVRLLNHNNENVRLAVSHALERLTVSNDVCHKIEAEGVVYPLVNALKDTAMSESLMEKIMNILARILDPGKEMKLKFYDGPVNGSERALNATRSADIITGLAGNTDDPKVSKATIRENVLDSGVISRLIDILRTSSPYLQRKAASILEYISIIEPCMGTIIAADIESGLDAVFQQIVLKDIEDGIDSQQPELNALEAEEAGLAISAASRLLTKLLDFEQFRHAINSTHFTQVLRTVVKSDIPLHHKDWVAASLVKLESSSGSHVGPENPINMEVTLYETIPRLIEQTRTSFSPEAQEAAVIELNSILSKGVVDYTRVVAAQGGIFPLVKVIEEGSGKAVEASLAILFNLSMDSENHLTIIAAGAVPALRKIVYSQRPQWMRALHLLRTLPTR* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01780 862 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 233 275 IPR000225 GO:0005515
Eupl04g01780 862 ProSiteProfiles HEAT repeat profile. 234 272 IPR021133 -
Eupl04g01780 862 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 508 IPR000225 GO:0005515
Eupl04g01780 862 SUPERFAMILY ARM repeat 425 845 IPR016024 -
Eupl04g01780 862 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 40 861 - -
Eupl04g01780 862 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 190 223 IPR000225 GO:0005515
Eupl04g01780 862 SUPERFAMILY ARM repeat 104 317 IPR016024 -
Eupl04g01780 862 Gene3D - 97 327 IPR011989 -
Eupl04g01780 862 MobiDBLite consensus disorder prediction 72 101 - -
Eupl04g01780 862 Gene3D - 406 622 IPR011989 -
Eupl04g01780 862 Gene3D - 635 861 IPR011989 -
Eupl04g01780 862 SMART arm_5 455 495 IPR000225 GO:0005515
Eupl04g01780 862 SMART arm_5 179 221 IPR000225 GO:0005515
Eupl04g01780 862 SMART arm_5 222 262 IPR000225 GO:0005515
Eupl04g01780 862 SMART arm_5 822 861 IPR000225 GO:0005515
Eupl04g01780 862 SMART arm_5 263 306 IPR000225 GO:0005515
Eupl04g01780 862 SMART arm_5 781 821 IPR000225 GO:0005515
Eupl04g01780 862 SMART arm_5 582 622 IPR000225 GO:0005515
Eupl04g01780 862 SMART arm_5 137 178 IPR000225 GO:0005515
Eupl04g01780 862 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 792 834 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01780 105 320 U-box Gene Family AT2G23140 27.727 8.15e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01780 - - nnu:104609984 1137.09