Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01752 ATGGCCGAGGGAGACGTCGGTCGATTCGGTCAGGTCCTCTTGGACCTTGTTCATGATATAGGACGGATCAGTGGGTTCCATGACGCCTTCAAAAGAGATTGCACCGATCTCTGTCGTAGAATTTCGCTTCTTTCCCATTTGTTTGAAGAGATCAGGGAATTCAATGGTGCCTGGCTACCCTCGGCTTCTTCCTCTTCTTCTTCTTCTTCTTGCTTGGATGATATGCTAGTGGCTCTCCAGGCCACTAAGCGACTACTTCTTGTTGCAGGGAATTTTGATTCCATCATATTTCTCGACGATGCGGGCAAGAAAATCGCCTTCGAATTCCAATGTGTGACATGGCAGTTGGAGAGAGCATTGGGGAACTTACCATATAATCATTTTGACATATCCGACGAAGTTCGAGAACAGGTTGAATTGGTAAGGGCTCAACTGAGAAGAGCAACAGAAAGGCATGGGCCTCTGAATCCAAAATTATTTTCTTGTTCCTTACCCCAGCCACTTGACGGAGAAGTTGATCTCCGAGAATCGGGTGGCAGGATAGTTAGCAGCTTGCATGTTGATAACATAGGAAATGTTGGTCATGGATTTCAAGCAATGGTGGGTGAGACAGGAGGTAACATGGAACAGATGATGCATGAACTGGAAACAATGAAGAACCACTCTTCATCATCTGAGGCTTGTAAAGTGAACAATGCTGTTGCCATCAAGGCAGATCAATTGGCGAACAAGAGCTTGGAGGGAACTAAGAAGCCTGACTCCGTTGTAATTCCTGACGATTTCCGTTGCCCTATATCTCTTGAACTGATGAGGGATCCTGTTATTGTGGCCACAGGGCAGACTTATGAAAGGTCTTTTATACAGAGATGGATAGATTGTGGCAATAAAACATGTCCGAAAACTCAGCAGATGCTCCCTAATCTGACGCTTACCCCGAATTACGTATTGAGAAGTCTTATTACACAGTGGTGTGAAAAGCATAAAATTGAGCAGCCAATGGGATCCACAAATGGAAGGATAAGAAAGAGTGATGGATCATTTCATGAAGTTAGTGGTGACAGAGCAGCCATCAATGCTCTGGTCCGTAAGCTCTCCAGTCGGTCAGTTGAGGAGCGGAGAAATGCTGTCTCTGAAATCCGATCACTATCCAAAAGAAGCACAGACAATCGGATACTGATAGCGGAGTCGGGAGCTATTCCAATTCTAGTCAACCTGTTAACGACAGAAGATGTGAGAACACAAGAAAATGTGGTCACATCCATTCTCAACCTTTCTATATATGAGAATAACAAGGAGCTGATAATGCTTGCTGGGGCTGTTCCTTCGATCGTCCAAGTCCTTAGGATGGGAAGCATGGAAGCCAGGGAGAATGCAGCAGCAACCCTTTTTAGCTTGTCACTTTTAGATGAGAACAAGATAACCATTGGGGCATCTGGGGCGATACCAGCTTTGGTGGATTTGCTTCAAAATGGAAGCTTGAGAGGGAAGAAAGATGCCGCGACAGCACTGTTCAACTTGTGCATTTATCAGGGGAACAAGGGCCGTGCAGTGAGGACAGGGATTCTCGTGCCGCTGATAAAGATGCTCACAGATTCAAGCAATTGCATGGTAGATGAAGCTCTCACAATACTGTCAGTTCTCGCCAGTCACCAAGAAGGTAAGGTGGCCATAGCAAAGGCTAGCACCATTCCTGTTTTGATAGACCTTATGAGAACAGGCCTACCACGCAACAAGGAGAATGCGGCCGCCATCCTACTTGCCTTATGCAAGAAAGATGTTGAGAACCTTGCCTGTATAGGCAGATTGTGCGCGGTCATACCTCTGACGGAGCTTGCTAAGAGTGGTACAGAGAGGGCCAAACGAAAGGCTACTTCACTGTTGGAGCATCTTCGAAAGTTGCAGCAGCTCTAA 1911 0.4621 MAEGDVGRFGQVLLDLVHDIGRISGFHDAFKRDCTDLCRRISLLSHLFEEIREFNGAWLPSASSSSSSSSCLDDMLVALQATKRLLLVAGNFDSIIFLDDAGKKIAFEFQCVTWQLERALGNLPYNHFDISDEVREQVELVRAQLRRATERHGPLNPKLFSCSLPQPLDGEVDLRESGGRIVSSLHVDNIGNVGHGFQAMVGETGGNMEQMMHELETMKNHSSSSEACKVNNAVAIKADQLANKSLEGTKKPDSVVIPDDFRCPISLELMRDPVIVATGQTYERSFIQRWIDCGNKTCPKTQQMLPNLTLTPNYVLRSLITQWCEKHKIEQPMGSTNGRIRKSDGSFHEVSGDRAAINALVRKLSSRSVEERRNAVSEIRSLSKRSTDNRILIAESGAIPILVNLLTTEDVRTQENVVTSILNLSIYENNKELIMLAGAVPSIVQVLRMGSMEARENAAATLFSLSLLDENKITIGASGAIPALVDLLQNGSLRGKKDAATALFNLCIYQGNKGRAVRTGILVPLIKMLTDSSNCMVDEALTILSVLASHQEGKVAIAKASTIPVLIDLMRTGLPRNKENAAAILLALCKKDVENLACIGRLCAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01752 636 Coils Coil 616 636 - -
Eupl04g01752 636 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 397 439 IPR000225 GO:0005515
Eupl04g01752 636 PANTHER U BOX DOMAIN-CONTAINING 29 632 - -
Eupl04g01752 636 SUPERFAMILY RING/U-box 254 330 - -
Eupl04g01752 636 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 330 IPR013083 -
Eupl04g01752 636 SMART Ubox_2 260 323 IPR003613 GO:0004842|GO:0016567
Eupl04g01752 636 FunFam RING-type E3 ubiquitin transferase 340 433 - -
Eupl04g01752 636 Pfam U-box domain 257 328 IPR003613 GO:0004842|GO:0016567
Eupl04g01752 636 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842|GO:0016567
Eupl04g01752 636 SMART arm_5 386 426 IPR000225 GO:0005515
Eupl04g01752 636 SMART arm_5 550 590 IPR000225 GO:0005515
Eupl04g01752 636 SMART arm_5 509 549 IPR000225 GO:0005515
Eupl04g01752 636 SMART arm_5 592 632 IPR000225 GO:0005515
Eupl04g01752 636 SMART arm_5 468 508 IPR000225 GO:0005515
Eupl04g01752 636 SMART arm_5 427 467 IPR000225 GO:0005515
Eupl04g01752 636 Gene3D - 335 540 IPR011989 -
Eupl04g01752 636 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 479 506 IPR000225 GO:0005515
Eupl04g01752 636 Coils Coil 131 151 - -
Eupl04g01752 636 Gene3D - 541 635 IPR011989 -
Eupl04g01752 636 SUPERFAMILY ARM repeat 356 630 IPR016024 -
Eupl04g01752 636 FunFam RING-type E3 ubiquitin transferase 434 534 - -
Eupl04g01752 636 FunFam RING-type E3 ubiquitin transferase 536 635 - -
Eupl04g01752 636 CDD RING-Ubox_PUB 258 310 IPR045210 -
Eupl04g01752 636 Pfam Armadillo/beta-catenin-like repeat 387 425 IPR000225 GO:0005515
Eupl04g01752 636 Pfam Armadillo/beta-catenin-like repeat 469 507 IPR000225 GO:0005515
Eupl04g01752 636 FunFam RING-type E3 ubiquitin transferase 254 330 - -
Eupl04g01752 636 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 438 480 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01752 Eupl-Chr4 33803711 33807151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01752 13 635 U-box Gene Family AT1G23030 60.417 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01752 - - aew:130764936 853.203