Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01746 ATGGCGCAGCTTTCAGAAACCTACGCCTGCGTTCCATCAACGGAGAGAGGTCGAGGGATCCTAATCTCAGGGGATCCCAAATCGAACTCGATCCTCTACTGCAATGGCAGATCCGTTATTATTCGCTACCTTGACAAACCTCTTGAAGTTTCCATCTACGGCGAGCACGCTTACCAGGCCACCGTCGCTCGTTTCTCTCCCAACGGCGAGTGGATTGCCTCCGCCGATGTCTCTGGCACCGTAAGGATCTGGGGTAGGCACAATGATCACGTTCTCAAGAACGAATTTAGGGTTCTCTCTGGTCGGATTGACGATCTCCAGTGGTCGCCCGATGGCCTGAGGATCGTCGCTTCTGGTGATGGAAAGGGCAAATCGTTCGTCCGCGCTTTCATGTGGGATTCAGGCAGTAACGTAGGAGAGTTTGATGGCCATTCAAGGAGAGTACTTAGTTGTGCCTTTAAGCCAACTAGACCATTTCGCATCATCACATGTGGCGAAGATTTTTTGGTGAACTTCTATGAAGGGCCACCGTTCAAATTCAAGCTGTCTCAAAGGGAGCATTCAAATTTTGTCAATTGTGTAAGATTTTCTCCAGATGGGAGCAAGTTCATCACTGTAAGCTCAGATAAAAAGGGGATAATATATGATGGAAAGACTGGAGAAAAGATTGGAGAGCTGTCTCAAGAAGATGGTCACAAAGGTAGCATCTATGCTGTTAGTTGGAGTCCTGATAGTAAACAGGTACTGACTGTCTCTGCTGACAAGTCTGCGAAAATTTGGTTGATCACTGAGGATGGTAACGGGAAGGTAAAGAAAACTTTGGCATCTTCTGGCTCGGGTGGAGTGGAAGACATGTTGGTTGGATGTCTTTGGCAGAATGACCATCTTGTCACTATTTCTCTTGGTGGCATGATTAATTTGTTCTCAGCAAGTGATCCAGATAAATCTCCATTATCATTCTCTGGACACATGAAGAGTGTAACTGCATTAACTGTACTCCAAGGCAGCCAGAAAGTCATCTTGTCTAGCAGCTATGATGGTGTGATAGTAAGATGGATTCAAGGCATCGGATATGGTGGTAAATTAGAGAGGAAAGATAATGCTCAAATTAAATGTTTTGCTGCTACTGAAGAAGAAATTGTTTCATCTGGATTTGACAATAAGGTAAGGAGAATCCCTCTGCATGGGGATCAATGTGGAGATTCAGAACCCATTGATATTGGCAGTCAGGCAAAGGACTTGAGCCTTGCGCTTCTTTCTCCTGAACTTGCATTAGTTTCAACTGATTCAGGAGTTGTCATGCTTCGTGGGCCAAAAGTAGTGTCAACCATCAACCTTGGCTATGCCGTGACAGCATCCGCAATTGCACCTGATGGAAGCGAGGCAATTGTTGGTGGGCAAGATGGTAAACTGCACATATACTCTGTCGCTGGTGATACGCTTACGGAAGAGGCAGTCCTTGAGAAGCATCGGGGTGCTATAAGTGTCATACGTTACTCTCCAGACGCTTCTATGTTTGCTTCAGGGGATGTCAATCGAGAAGCTGTTGTCTGGGACCGTATCTCTCGAGAGTTGAAGCTTAAGAACATGCTGTACCACACTGCTCGCATAAACTGTTTGGCTTGGTCTCCTGAAAGCACCTTGGTTGCTACCGGATCCCTTGACACATGTGTCATCATATATGAAGTTGGCAAGCCAGCATCAAGTCGAATAACCATAAAGGGCGCTCACTTGGGTGGGGTCTATGGATTGGCTTTTACTGATGAGTGTAGTGTGGCGAGCTCGGGTGAGGATGCATGTGTCCGTGTCTGGAGATTAACAACGCAATGA 1830 0.465 MAQLSETYACVPSTERGRGILISGDPKSNSILYCNGRSVIIRYLDKPLEVSIYGEHAYQATVARFSPNGEWIASADVSGTVRIWGRHNDHVLKNEFRVLSGRIDDLQWSPDGLRIVASGDGKGKSFVRAFMWDSGSNVGEFDGHSRRVLSCAFKPTRPFRIITCGEDFLVNFYEGPPFKFKLSQREHSNFVNCVRFSPDGSKFITVSSDKKGIIYDGKTGEKIGELSQEDGHKGSIYAVSWSPDSKQVLTVSADKSAKIWLITEDGNGKVKKTLASSGSGGVEDMLVGCLWQNDHLVTISLGGMINLFSASDPDKSPLSFSGHMKSVTALTVLQGSQKVILSSSYDGVIVRWIQGIGYGGKLERKDNAQIKCFAATEEEIVSSGFDNKVRRIPLHGDQCGDSEPIDIGSQAKDLSLALLSPELALVSTDSGVVMLRGPKVVSTINLGYAVTASAIAPDGSEAIVGGQDGKLHIYSVAGDTLTEEAVLEKHRGAISVIRYSPDASMFASGDVNREAVVWDRISRELKLKNMLYHTARINCLAWSPESTLVATGSLDTCVIIYEVGKPASSRITIKGAHLGGVYGLAFTDECSVASSGEDACVRVWRLTTQ* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01746 609 Gene3D - 11 339 IPR015943 GO:0005515
Eupl04g01746 609 CDD WD40 56 349 - -
Eupl04g01746 609 Pfam WD domain, G-beta repeat 185 211 IPR001680 GO:0005515
Eupl04g01746 609 Pfam WD domain, G-beta repeat 63 84 IPR001680 GO:0005515
Eupl04g01746 609 Pfam WD domain, G-beta repeat 225 260 IPR001680 GO:0005515
Eupl04g01746 609 Pfam WD domain, G-beta repeat 533 561 IPR001680 GO:0005515
Eupl04g01746 609 SUPERFAMILY WD40 repeat-like 60 566 IPR036322 GO:0005515
Eupl04g01746 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 574 609 - -
Eupl04g01746 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 84 IPR001680 GO:0005515
Eupl04g01746 609 SMART WD40_4 267 309 IPR001680 GO:0005515
Eupl04g01746 609 SMART WD40_4 566 605 IPR001680 GO:0005515
Eupl04g01746 609 SMART WD40_4 134 174 IPR001680 GO:0005515
Eupl04g01746 609 SMART WD40_4 313 353 IPR001680 GO:0005515
Eupl04g01746 609 SMART WD40_4 524 562 IPR001680 GO:0005515
Eupl04g01746 609 SMART WD40_4 177 216 IPR001680 GO:0005515
Eupl04g01746 609 SMART WD40_4 437 475 IPR001680 GO:0005515
Eupl04g01746 609 SMART WD40_4 46 85 IPR001680 GO:0005515
Eupl04g01746 609 SMART WD40_4 89 133 IPR001680 GO:0005515
Eupl04g01746 609 SMART WD40_4 219 261 IPR001680 GO:0005515
Eupl04g01746 609 SMART WD40_4 480 519 IPR001680 GO:0005515
Eupl04g01746 609 FunFam Actin-interacting protein 1 11 337 - -
Eupl04g01746 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Eupl04g01746 609 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 1 606 - -
Eupl04g01746 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 519 IPR001680 GO:0005515
Eupl04g01746 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 260 IPR001680 GO:0005515
Eupl04g01746 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 487 519 - -
Eupl04g01746 609 SUPERFAMILY WD40 repeat-like 139 431 IPR036322 GO:0005515
Eupl04g01746 609 Gene3D - 7 605 IPR015943 GO:0005515
Eupl04g01746 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 563 IPR001680 GO:0005515
Eupl04g01746 609 FunFam Actin-interacting protein 1 338 606 - -
Eupl04g01746 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 260 - -
Eupl04g01746 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 574 609 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01746 187 509 Eukaryotic Initiation Factors Gene Family AT2G46290 23.055 7.24e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01746 K24736 - msin:131237676 1084.32