Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01741 ATGGGTATTCAAAGTCTTCTCAGATTCATGAAACCTTTTATCAAACCTATCCACATCAAAACATACGCCGGCAAGCGCGTTGGGATCGATGCGTATTCATGGCTTCACAAAGGCGCTTATTCATGCAGTTTGGAGCTCTGTCTCAACTCTGAGGGCGAAAAGAAATCACGTTATTTGCAGTACTTTATGCACAGAATCAATCTGCTTCGCCACCACAAAATTACCCCGGTTGTTGTTTTCGATGGTGGGAACATCCCATGTAAGTCCACCACGGAAGGCGAACGCCACAGGAGACGAGAAGCTAATCTTGCTTTGGCAAGAGAAAAGCTTAATCAAGGCGACGTCAATGGTGCTGTTGAATTCTTCCAGAGAGCAGTGTGTATTACTCCATCCATGGCACATCAACTGATTCAGATTCTGAGGTCAGAGAGTGTTGAATTCATAGTCGCTCCTTATGAGGCTGATGCACAGTTGGCGTACTTGTCGAGCCTTGAAGCAGAACAAGGAGGAATCGCGGCCGTGATTACAGAGGATAGTGATTTGATGGCCTACGGTTGCCAAGCTATTATCTTTAAGATGGACCGATATGGAAATGGTGAAGAGATTGTGCTAGACAAGGTTTTCAATTCTGTGGCCAGTTCAACAAAAGAGCAAAATTCTATGGCTGGTGTACCTTCCTTCAAGAATTTTGATAAAGAATTGTTCACAGGCATGTGTGTCTTAGCTGGCTGTGATTTCCTTCCATCAGTTCCAGGAATTGGGATTAAACGAGCTTATTCTTTGGTTTCCAAGTATAAGAACTTAGACAGGGTAGTGTCTGTATTAAAGTTTGAGAAGGGCAATCAAATGCCTGACGATTATGCGCAGTCTTTTAGAGAAGCAGTTGCAGTTTTTCATCATGCTCGAATATTTGATGCTGGCACTAAAACTATCAAACCCATAAAACCTCTGCCGGAAGTGCTTCTGCAGTCTCTCGATGGAGATCTGGATTTTCTGGGACCAGAAATCCCTCCATCAATAGCAACTGCCATTGCTGAAGGTCACTTGGATCCCATTACCATGGAAGCCTTTGATCACATCTCCAAAGTCGAAAGTCATCTGGATCCAATCATCATTCAAACTTCTGATCACTTCCCGAGTGCTGAGGCCCAGGTGTTGTCTTCCGAAGAGAGCTGCTTCACCGTTTTTTCTTCTTGTGAAACCACAGAAGAAAAGATCACAGTTATGGAGCAGAAGCCAACTTTGGACGAGAGAAAGTACTTGAACGAGGCAATTGCACTTGAGAAGTTAATTGTGCCTCTGGAACTCCCCCAGAAATCTGACAACATAGTTGAAAGAAGAGAGTTTCCTGACAACAATCCATTCAAGAAAAGAAAACTTGATGACGACGTTCATTTGGATCAGAGACAAAGCACTACCGAACAAGTTTCTGTGGTGACGGATGATGAAAAGTTAGGTGAAATCTTGTGTGTGACCTCAGAGTCTCAGGAGAGTGTAGAATCTAAGCCTGCTAAGAAAATTGCTATTACTAAAGTGGTACGGAAAAATGAGATGAAATTGCAATGTAAGAATAGTTGCAAGAGTTCAGAGAGTAGCAAAAGCAGTATTCTTAATTTCTTTACTCGTTTGTAA 1632 0.4283 MGIQSLLRFMKPFIKPIHIKTYAGKRVGIDAYSWLHKGAYSCSLELCLNSEGEKKSRYLQYFMHRINLLRHHKITPVVVFDGGNIPCKSTTEGERHRRREANLALAREKLNQGDVNGAVEFFQRAVCITPSMAHQLIQILRSESVEFIVAPYEADAQLAYLSSLEAEQGGIAAVITEDSDLMAYGCQAIIFKMDRYGNGEEIVLDKVFNSVASSTKEQNSMAGVPSFKNFDKELFTGMCVLAGCDFLPSVPGIGIKRAYSLVSKYKNLDRVVSVLKFEKGNQMPDDYAQSFREAVAVFHHARIFDAGTKTIKPIKPLPEVLLQSLDGDLDFLGPEIPPSIATAIAEGHLDPITMEAFDHISKVESHLDPIIIQTSDHFPSAEAQVLSSEESCFTVFSSCETTEEKITVMEQKPTLDERKYLNEAIALEKLIVPLELPQKSDNIVERREFPDNNPFKKRKLDDDVHLDQRQSTTEQVSVVTDDEKLGEILCVTSESQESVESKPAKKIAITKVVRKNEMKLQCKNSCKSSESSKSSILNFFTRL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01741 543 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Eupl04g01741 543 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 235 250 IPR006084 -
Eupl04g01741 543 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Eupl04g01741 543 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Eupl04g01741 543 SMART xpgn3 1 102 IPR006085 GO:0004518
Eupl04g01741 543 SMART HhH_4 232 265 IPR008918 GO:0003677|GO:0003824
Eupl04g01741 543 FunFam Exonuclease 1, putative 1 214 - -
Eupl04g01741 543 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 501 IPR006084 -
Eupl04g01741 543 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Eupl04g01741 543 SMART xpgineu 141 217 IPR006086 GO:0004518
Eupl04g01741 543 FunFam exonuclease 1 228 301 - -
Eupl04g01741 543 CDD H3TH_FEN1-like 233 305 - -
Eupl04g01741 543 SUPERFAMILY PIN domain-like 2 245 IPR029060 -
Eupl04g01741 543 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Eupl04g01741 543 Gene3D - 1 212 - -
Eupl04g01741 543 CDD PIN_EXO1 1 209 IPR044752 GO:0046872
Eupl04g01741 543 Gene3D - 228 301 - -
Eupl04g01741 543 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Eupl04g01741 543 Pfam XPG I-region 145 245 IPR006086 GO:0004518
Eupl04g01741 543 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 231 367 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01741 Eupl-Chr4 33323259 33331722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01741 1 325 Core DNA Replication Machinery Family AT5G26680 24.926 3.10e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01741 K10746 - nnu:104591943 734.176