Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01726 ATGGGGGATCATTTTGTCTTGCTGGTGGATCGGTTGCTCACTGAATCCACACTGGAAGCTGCAATAGAGAGCAGAAACCGGTCTCAGCAAGCCACACCCTTGGCAGTTGCAGTGACGAAAACCGAATGCTCTTCCTATAAAATTGATTTTTGTAATAGCTTGTCACCAAGGAAATTGGTGGAGTGCCGGATTTGCCAAGAAGAAGACGAAGATTCTAATATGGAGATACCTTGCTCTTGTTGCGGCAGCTTGAAGTATGCTCACCGAAGATGTGTTCAGAGGTGGTGTAATGAGAAGGGTGACACCATGTGTGAGATATGCCAACAGCAATTCAAGCCGGGTTATACAGCACCTCCTCAGTTATTTCGCTATGGGGGTATTCCAATGAACTTCAGGGGAAACTGGGAGATTTCCAGAAGGGACCTGCATAACCCTCGATTTATAGCAATGGTTGCAACGGACCGCAATTTCCTGGATCCTGGCTATGATGAGCATTCAGCCCCCACTTCAAGAAGCCTGATGTTCTTCTGTTCAGTTGCTATAATTTTCATGGTTCTTCTAGTCCTGCGCCATACTCTGCCTATCATAATTAGTGGAGCTGAGGAGTACTCGTTCGCATTGTTCATGTTGTTGCTGTTGAGGACCGGTGGGATTCTTCTACCAATCTATATAATGGTAAGAGCAGTGACAGCTATCCAACGTCGGCACCATCAACAGGAACCCCAGGATTTCTCCCTTAATGCATCTGAAGAAGAAAATGAGCAGACACATCTGCAGCCTCAGCCACATCTCATTCATGTGCAGTAA 807 0.4634 MGDHFVLLVDRLLTESTLEAAIESRNRSQQATPLAVAVTKTECSSYKIDFCNSLSPRKLVECRICQEEDEDSNMEIPCSCCGSLKYAHRRCVQRWCNEKGDTMCEICQQQFKPGYTAPPQLFRYGGIPMNFRGNWEISRRDLHNPRFIAMVATDRNFLDPGYDEHSAPTSRSLMFFCSVAIIFMVLLVLRHTLPIIISGAEEYSFALFMLLLLRTGGILLPIYIMVRAVTAIQRRHHQQEPQDFSLNASEEENEQTHLQPQPHLIHVQ* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01726 268 ProSiteProfiles Zinc finger RING-type profile. 62 108 IPR001841 -
Eupl04g01726 268 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Eupl04g01726 268 FunFam Zinc finger family protein 51 117 - -
Eupl04g01726 268 SMART ringv_2 61 108 IPR011016 GO:0008270
Eupl04g01726 268 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
Eupl04g01726 268 MobiDBLite consensus disorder prediction 248 262 - -
Eupl04g01726 268 CDD RING_CH-C4HC3_MARCH 62 108 - -
Eupl04g01726 268 MobiDBLite consensus disorder prediction 248 268 - -
Eupl04g01726 268 SUPERFAMILY RING/U-box 60 112 - -
Eupl04g01726 268 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 239 IPR033275 -
Eupl04g01726 268 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Eupl04g01726 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 113 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01726 Eupl-Chr4 32722651 32726123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01726 56 108 C3H Transcription Factor Family AT2G37950 44.643 1.50e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01726 - - ming:122078840 406.371