Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01697 ATGGATACTCTCTCATCTTCCACCACCGAAATCCTAACCCTAGATTCTTCCGACCTCTTCCTTGAGTCTTACAGAGCTTTCTCTCAAAACTCTCTGCAAGGTTCTCCGCCTTACTCTTTCACTCTCCTCTCTCAGCAATCTCCTCTCCCTCCCGTCCCTACTGATATCGCTCAATCGAAGCTCATACCTAAAACCCGTTACATCATCGACGGGTTTCGATATTCCGGCAATTACTCTGTTTCATATTTCCTCTCTCATTTCCATTCCGATCACTATGCCGGCTTGAACCCTGGTTGGTCGAAAGGTCTCATTTTTTGCTCCGAAATCACAGCTCGGCTCCTTGTCGAAGCTTTAAAAGTATCGCCTTTGTTTGTGGTTTCACTGCCACTCCGTGAACCTGTTCATATCGATGGGTGTGAGGTCAAGCTCATCGATGCGAACCACTGCCCTGGTGCAGTCCAGTTTTTGTTTAAGATACCTGGAATTCAGGGCAAAGATGAGAGGTACGTTCACACCGGAGATTTCCGGTTTTGTAGTTCAATGAAATTAGAGCCTGTCCTTAGTGAATTTGTGTGCGCCGATGCAATTTTCTTAGATACTACGTACTGTAATCCGAAGTTTGTTTTTCCCTCGCAAGATGAATCGGTCAACTATATAGTGAAAACGATAGATAGAATTAGAGTTGAAAATAAGGATTTAATGAATTCTGTGTTGTTTCTTATTGCTACGTATGTGGTTGGGAAAGAGAGGATTTTGCTGGAAATTTCACGTAGATGTAAATGTAAGATACATGTAGCTGGTAAGAAAATGGTACTTTTGTGCGTTTTAGGGTTTGGCGAACATGAGATATTTACAGAGGATGCTTCTGCGAGTGATGTTCATGTGGTTGGATGGAATGTGTTGGGTGAGACTTGGCCCTATTTTCGACCTAATTTTGGAAAAATGAAGGAGATTATGATTGAGAGAGGATACTCGAAGGTTGTGGGTTTTGTTCCAACGGGGTGGATGTATGAAGTGAAGCGAGATGGGTTTGCAGTGAGGTCTAAGGATTCATTTGAGATCCATCTTGTACCATACAGTGAACATTCGAGCTACGATGAGCTCAGAGAGTACGTGAGATTCTTGAGACCGAAGCATGTTATCCCAACAGTGGGCTTGGATGTTGATAAACTTGATAGTAAGCATGCTATTGCAATGCGGAAGCATTTTTCTGGGTTGGTTGATGAAATGGCCAACAAGCAAGAATTTTTGATGGGTTTTAATCGGAGGTCACGGGACATGGATAATAAGGGTGAAGATGATGTCAATATTGACCCGAACAAGGAGAAAGAGATCAAGCCTCCAAAAGAGCTTTTGGAAACTCCTAATAATACTGATCCGGGGTTTGTGTTGGACTCGGTCTCTTTGGTGCAAGATCCTGGTTTGCAAGATTCAGCTGTGCTGAATGAAAAATATACAGAGGGAATGATACAAGACCTTCGTGATTGTTTGCCTGGTTGGGTTACCCAGGATCAGATGAGAGATCTGCTTACTAAGTCAGGTGGAAATATTGTTGAAGCAGTTTCTAATTTTTATGAACGTGAAACGGAGTTTCATGAGCAGGTAATTGTTTCTACTAAGTCCATTGCTATCTCTCAAGCAAGTTCACTGAGTGATTCTGCTTTACTTGCTGAACTAGTACCTATTGGTGACAATCCTGATGGAAGTATAAGCACTTTAAGTCAACACAAGAAGTCACCCAATATAAGGCGTTCAATTAAGAGCACTGTTTCTCCCACTAAAAGAGTGTCAGGCCTTGATAATAAGCCAAACAAGAAAGTAAAACACAGTTCTACTCTGGAATCTAGTGGGTCCAAACAATCTACAATAACGAAGTTCTTCTGTAAACTTGCACCCAATGCTTCACAAGTTGGTGGTGTTAGTACTGCTACTGCTGAGCAATGCCCAAATAATGGGAATTTGTTGGCAAATGACACTATTGAACCATACAAAGAGGAATTAGATCAGTTTCTTCAGGTTCTAAATGGCTGTGTATCAAGAAGCAATGCTGGCTCTATGCTAGAGAAGGCAAAAGGAGATATTAATGTGGCACTGGATTTATATTATAGTAATTCTGGTGGTGACCTTGAGGAGAAAGAAGGGAGTTTAGCATTCTGCAGCAAATCAGTTCAAACTCAATGCTGTGTTAATAACTGCTCTGCTGGGAATGAAAGAAAATCATCTGAGGAGACAGCTAATATGCCTAATTTATTTGTACAAGGGCTTTCCACAGGGGATGCAACTGCAACTCTTGTTTTGTTACCACAAGAAAAGTATTCTCCTGTTGAGCATGCATGCTGGAGGGCTGGACAGCCTGCTCCATATCTACATCTTGCACGGACATTTGATCTGGTGGAGGGGGAAAGAGGCAAGATTAAAGCTACCAGTATGCTGTGCAACATGTTTAGAAGCTTGCTTTCCCTGTCACCTAAAGATGTGCTACCAGCCGTGTATTTGTGCACAAATAAGATTGCCGCTGACCATGAAAATATGGAACTGAACATTGGTGGCAGTCTGGTGACAGCTGCACTTGAAGAGGCATGTGGGACAAACAGGTCCAAAATAAGGGAAATGTACAATAATTTGGGTGATCTTGGTGATGTTGCACAAGTATGCCGACAAACACAATCATTACTTGCCCCACCTTCTGCACTTACAATCCAAGAAGTCTTTTCTGTGCTTCGAAAGATAAGTGTGGAAACAGGCAATGGAAGTACTGTACGAAAGAAAAACCTCATTGTAAATCTCATGCGCTCTTGTAGAGAGAAGGAAATGAAGTTCCTCGTTCGAACTTTGGTTCGTAATTTGCGGATTGGAGCAATGATGAGAACTGTTCTTCCTGCATTGGCACGAGCTGTTGTGATTAACTCCTCTAATTTTGTCCATGAAGGAGCCCTCGAAAGCCTAAAGGAGAAGCTTCTGTGCATTTCTGCAGCAGTGGTTGAGGCATATAACATACTTCCCAACTTGGATTTGCTTGTTCCTTCTCTCATAAGCAAAGGGATTGAATTTTCTGCAACAACTTTGTCAATGATTCCAGGCATACCTATTAGACCCATGCTTGCAAGAATTACCAATGGAGTTCCGCAAGCACTGAAATTGTTTCAAGGTAGAGCTTTTACATGTGAATATAAGTATGATGGCCAGCGCGCCCAAATCCACAAATTAGTTGATGGATCTGTGAGAGTCTTTTCACGTAATGGGGATGAAACAACTTTTAGATTTCCAGATTTAGTAAATATAATCAAGGACTCATGTAAGCCTGCTACAATGACTTTCATAGTGGATGCAGAGGTAGTCGCAGTTGATAGGAAGAACCGATGCAAGCTTATGTCCTTTCAAGAACTATCATCACGAGAGAGAGGGAGTAAAAATTCCTTGCTCACAATGGATAGTATAAAGGTTGACATTTGCATCTTCGTCTTTGATATCATGTTTGCTAATGGAGAGCAGCTGCTGGGTCTTCCTCTACGTCAAAGGCGAAAGTATTTGAAGGATATTTTTTATGATGAAAAGTTGGGTTATTTCGAGTATGCAAAGGAAATAACAGTGGAAGCTGAAGATTCTTCTTTGGATTCTCAAGCCACATTGACTAAGATAAACTTGTTTCTTGAGGATGCATTTAACTCCTCATGTGAAGGAATCATGGTGAAATCTCTAGATGTTGATGCTGGGTATGCTGCATCAAAGCGTACTGACACATGGTTAAAGGTCAAGCGAGATTATATGGGACTGAATGATTCTCTTGATTTAGTTCCCATTGGTGCTTGGCATGGGAATGGGAGAAAAGCGGGATGGTACAGTCCATTCCTTATGGCATGTTACAACCCCGATACAGAAGAATTTCAAAGTGTGTGTCGCGTCATGTCTGGATTCTCTGATTCTTTCTATTTAGAGATGAAAGAGTTTTTCTCCGGCGAAAAGATATTTTCCAAGAAACCACCTTATTATCAAACGGCTGAGGTACCTGATAGATGGTTCTCTCCGGAGCTTGTTTGGGAAATAAGAGGTGCAGACTTCACAATTTCGCCGGTTCACCAGGCTGCCATTGGTTTAGTTCATCCCTCGCGTGGTATCTCAATCAGATTCCCAAGATTCATCCGCTCTATATTAGATAGGAGAGCGGAGGATTGTAGCACGGCTGCAGATGTAGCTGATATGTTTCGGTCTCAGACCCGAAAGATGGATGTGAGTGTCGAAGATTGA 4245 0.4205 MDTLSSSTTEILTLDSSDLFLESYRAFSQNSLQGSPPYSFTLLSQQSPLPPVPTDIAQSKLIPKTRYIIDGFRYSGNYSVSYFLSHFHSDHYAGLNPGWSKGLIFCSEITARLLVEALKVSPLFVVSLPLREPVHIDGCEVKLIDANHCPGAVQFLFKIPGIQGKDERYVHTGDFRFCSSMKLEPVLSEFVCADAIFLDTTYCNPKFVFPSQDESVNYIVKTIDRIRVENKDLMNSVLFLIATYVVGKERILLEISRRCKCKIHVAGKKMVLLCVLGFGEHEIFTEDASASDVHVVGWNVLGETWPYFRPNFGKMKEIMIERGYSKVVGFVPTGWMYEVKRDGFAVRSKDSFEIHLVPYSEHSSYDELREYVRFLRPKHVIPTVGLDVDKLDSKHAIAMRKHFSGLVDEMANKQEFLMGFNRRSRDMDNKGEDDVNIDPNKEKEIKPPKELLETPNNTDPGFVLDSVSLVQDPGLQDSAVLNEKYTEGMIQDLRDCLPGWVTQDQMRDLLTKSGGNIVEAVSNFYERETEFHEQVIVSTKSIAISQASSLSDSALLAELVPIGDNPDGSISTLSQHKKSPNIRRSIKSTVSPTKRVSGLDNKPNKKVKHSSTLESSGSKQSTITKFFCKLAPNASQVGGVSTATAEQCPNNGNLLANDTIEPYKEELDQFLQVLNGCVSRSNAGSMLEKAKGDINVALDLYYSNSGGDLEEKEGSLAFCSKSVQTQCCVNNCSAGNERKSSEETANMPNLFVQGLSTGDATATLVLLPQEKYSPVEHACWRAGQPAPYLHLARTFDLVEGERGKIKATSMLCNMFRSLLSLSPKDVLPAVYLCTNKIAADHENMELNIGGSLVTAALEEACGTNRSKIREMYNNLGDLGDVAQVCRQTQSLLAPPSALTIQEVFSVLRKISVETGNGSTVRKKNLIVNLMRSCREKEMKFLVRTLVRNLRIGAMMRTVLPALARAVVINSSNFVHEGALESLKEKLLCISAAVVEAYNILPNLDLLVPSLISKGIEFSATTLSMIPGIPIRPMLARITNGVPQALKLFQGRAFTCEYKYDGQRAQIHKLVDGSVRVFSRNGDETTFRFPDLVNIIKDSCKPATMTFIVDAEVVAVDRKNRCKLMSFQELSSRERGSKNSLLTMDSIKVDICIFVFDIMFANGEQLLGLPLRQRRKYLKDIFYDEKLGYFEYAKEITVEAEDSSLDSQATLTKINLFLEDAFNSSCEGIMVKSLDVDAGYAASKRTDTWLKVKRDYMGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPDTEEFQSVCRVMSGFSDSFYLEMKEFFSGEKIFSKKPPYYQTAEVPDRWFSPELVWEIRGADFTISPVHQAAIGLVHPSRGISIRFPRFIRSILDRRAEDCSTAADVADMFRSQTRKMDVSVED* 1415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01697 1414 FunFam DNA ligase 208 362 - -
Eupl04g01697 1414 MobiDBLite consensus disorder prediction 568 616 - -
Eupl04g01697 1414 Pfam DNA ligase N terminus 787 963 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Eupl04g01697 1414 Gene3D - 62 384 IPR036866 -
Eupl04g01697 1414 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 295 1406 - -
Eupl04g01697 1414 FunFam DNA ligase 1061 1192 - -
Eupl04g01697 1414 MobiDBLite consensus disorder prediction 568 598 - -
Eupl04g01697 1414 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 992 1254 - -
Eupl04g01697 1414 CDD Adenylation_DNA_ligase_I_Euk 1021 1255 - -
Eupl04g01697 1414 SUPERFAMILY Metallo-hydrolase/oxidoreductase 82 385 IPR036866 -
Eupl04g01697 1414 CDD SNM1A-1C-like_MBL-fold 44 205 - -
Eupl04g01697 1414 Gene3D - 1257 1413 IPR012340 -
Eupl04g01697 1414 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 768 1015 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Eupl04g01697 1414 Gene3D - 767 1034 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Eupl04g01697 1414 Gene3D - 1042 1256 - -
Eupl04g01697 1414 NCBIfam ATP-dependent DNA ligase 845 1402 IPR000977 GO:0003910|GO:0005524|GO:0071897
Eupl04g01697 1414 SUPERFAMILY Nucleic acid-binding proteins 1260 1404 IPR012340 -
Eupl04g01697 1414 Gene3D - 208 362 - -
Eupl04g01697 1414 Pfam DNA repair metallo-beta-lactamase 281 385 IPR011084 -
Eupl04g01697 1414 ProSiteProfiles ATP-dependent DNA ligase family profile. 1143 1289 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Eupl04g01697 1414 MobiDBLite consensus disorder prediction 422 442 - -
Eupl04g01697 1414 Pfam ATP dependent DNA ligase domain 1032 1252 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Eupl04g01697 1414 Pfam ATP dependent DNA ligase C terminal region 1277 1381 IPR012309 GO:0003910|GO:0006281|GO:0006310
Eupl04g01697 1414 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1056 1064 IPR016059 GO:0003909
Eupl04g01697 1414 FunFam DNA ligase 1256 1413 - -
Eupl04g01697 1414 CDD OBF_DNA_ligase_I 1260 1403 - -
Eupl04g01697 1414 Gene3D DNA ligase/mRNA capping enzyme 1061 1192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01697 Eupl-Chr4 32051804 32161511 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01697 755 1404 Core DNA Replication Machinery Family AT1G08130 39.939 7.11e-163 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01697 - - ming:122078630 2053.48