Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01676 ATGCAGAGAGACAGTTGTTCCTCCAATGGAGGAATCAATGCGGTCATTTCATCACCACTCAAATTTCAGAATGAACGGTATTCATCTCCAGCTAGAAATCCAGCCAACGGCATCGGATTCACCTCCCTCTACTCCTCCATCTTCTCTCCAAAAACATCTCTCCCAAACTCCGTCTCTCCTTCCTCCTGCGACGAAGAAAACAACGCGGCCTGCACAGGGAACCGACTCTACCTTGCTCGCCTCACTTTGGAATACCAGCAGCTTGTTAATCGGTACGGTTTGTGCCTCGGTCATCTACAAGAAGCTGCCAAAGAAGCTGAAGCTCTTCGCGAAGAGAACGACAGCCTTCGTTTGGCGAACAACGATCTCACCAACCGTTTGAGCCTCTTGGCACAGACTGCTCTCCAGAACCGCCTTCTCTCCTCTGGTTATCCGTCTCTATCGGTCATTAATGATTTCCGTAGTCTCTGCGTTGCAGATAACGGTCGTAACAGCCGTTTTTCGGGTGAAGTTTCAGAGACGAGTCCAACGAGTGTTATCACGAACAATCGGTTTGAGAAGAGTGTGGAGCGGGTTTCATTACCGAAGAGCATCTCGATTCGTTCCAGTGGATACTTGGGGGCGAATCAAGCTAGTGGGAGCAGTGCAGGTTCAAACATCACCAATCGACTTCGCGTCGCCAGTTCTGCAGTCATGAACAAAACGCAACATATGTACGTGGGTGGAGGTGGAGAGAAGAAAGAGGAAGAAGCACTGGAATTGGAGGTGTACAATCAAGGGATGTTGAAGACGGAACTATGCAACAAGTGGCAGGAGAGTGGAAGCTGTCCTTATGGGGAGCAGTGTCAGTTTGCACACGGCATCTCCGAGCTTCGCCCCGTGATCCGCCATCCGCGCTACAAGACCGAGGTCTGCCGGATGGTTCTCTCAGGGGATACCTGCCCCTATGGCCATCGTTGCCACTTCCGTCATGCTCTCACTGAGCAGGAGAGGCTCATGAGCCACGTGTAG 1011 0.5153 MQRDSCSSNGGINAVISSPLKFQNERYSSPARNPANGIGFTSLYSSIFSPKTSLPNSVSPSSCDEENNAACTGNRLYLARLTLEYQQLVNRYGLCLGHLQEAAKEAEALREENDSLRLANNDLTNRLSLLAQTALQNRLLSSGYPSLSVINDFRSLCVADNGRNSRFSGEVSETSPTSVITNNRFEKSVERVSLPKSISIRSSGYLGANQASGSSAGSNITNRLRVASSAVMNKTQHMYVGGGGEKKEEEALELEVYNQGMLKTELCNKWQESGSCPYGEQCQFAHGISELRPVIRHPRYKTEVCRMVLSGDTCPYGHRCHFRHALTEQERLMSHV* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01676 336 FunFam zinc finger CCCH domain-containing protein 15-like 255 294 - -
Eupl04g01676 336 FunFam Zinc finger protein 36, C3H1 type-like 1 295 331 - -
Eupl04g01676 336 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Eupl04g01676 336 PANTHER CCCH ZINC FINGER/TIS11-RELATED 83 333 IPR045877 GO:0003729
Eupl04g01676 336 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 287 IPR000571 GO:0046872
Eupl04g01676 336 SUPERFAMILY CCCH zinc finger 295 330 IPR036855 GO:0046872
Eupl04g01676 336 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872
Eupl04g01676 336 Gene3D - 256 294 - -
Eupl04g01676 336 Gene3D - 295 331 - -
Eupl04g01676 336 Coils Coil 99 126 - -
Eupl04g01676 336 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Eupl04g01676 336 SMART c3hfinal6 261 288 IPR000571 GO:0046872
Eupl04g01676 336 SUPERFAMILY CCCH zinc finger 258 293 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01676 Eupl-Chr4 31168515 31170606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01676 86 334 C3H Transcription Factor Family AT1G68200 50.579 6.15e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl04g01676 zf-CCCH 1.4e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01676 K18753 - nnu:104591328 404.831