Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01673 ATGGCGAGCGGCACGGCGGTTCGGCGGCAAGGCCAGTCGGAACGGAAACCATTGGGGCTATTGTCTCTGTTGGAGGAGGAGTCCAATTTCCCAAATGGCACTCACTTAACATTTGCCATCAAGCTTAAGCAGCACTCGAATTCTAATTCATGTTTCATAGGAGAATGGGACAAAGCATTCTGTGTCTGCCATTATACAGGGGAGGTTGATGAGATGATAAAGGATCGGATTAGTGATTTGCCGGATGAAATTCTTTCCTCCATCTTATCGTTGTTGACGATGAAAGACGCAGCAAGAACTAGCAGACTTTCGCGCAGATGGAGATACCTCTGGAGGACATCTAGTCTCAACTTTGATGTTGCAAATATGAGAGGAAAAGACTACCCTGCCAGAAGATTCAGAACAAATATCACTGGCAAATATAGTAAAACACAGAAGAAGTTGCTACGGAAGGAAAGGTGTAGATTTGTAAAATGGGTTGATGAGATCTTGCAGCATCACCAACATCCAGAGATAAACGCATTAATGGTGCGCTTTAGTTTGGATAAAAAGTTTACTCCTCACATTGATCAATGGATTCATATTGCAGTAGCTAAGAGAGTTCGAGGGCTTGTTCTCAACTTGGCGAATTTTGATGCTAATATTGGTGTCAAAGGTGACAAACTTTATGATTTTCCTTGTTTTTTTACTCAAGAAAAGGGTTCCTCTTTGAAGTATTTGTATTTGAGAGCTTGCATCTTGAGACCTCCTCTTGATTTCAATGGTTTTAGCTCCCTTATAGACCTCACTTTGAATGAAGTTGATATAGCTGAACAACATATTGTTAATCTATTGTCGAACAGTTCAAACCTAGAACGGTTGAGCGTGTTGAACTGCTTGAAATTGGTTAATTTGAAAATCACTGGCTCATCCCTCAGACTGAAGTTCCTAAGCATAGCCTTCTGTATGTGTTTGGAGAAGGTAGAGATCTTTGACATACATCTCACTGAATTCAAATATGGGGGCCCCATGGTGAAGTTCTATTTCCAGAATGCTCCTCGGCTTGTGAACTCAGTTGCCCGTAACTAA 1068 0.4157 MASGTAVRRQGQSERKPLGLLSLLEEESNFPNGTHLTFAIKLKQHSNSNSCFIGEWDKAFCVCHYTGEVDEMIKDRISDLPDEILSSILSLLTMKDAARTSRLSRRWRYLWRTSSLNFDVANMRGKDYPARRFRTNITGKYSKTQKKLLRKERCRFVKWVDEILQHHQHPEINALMVRFSLDKKFTPHIDQWIHIAVAKRVRGLVLNLANFDANIGVKGDKLYDFPCFFTQEKGSSLKYLYLRACILRPPLDFNGFSSLIDLTLNEVDIAEQHIVNLLSNSSNLERLSVLNCLKLVNLKITGSSLRLKFLSIAFCMCLEKVEIFDIHLTEFKYGGPMVKFYFQNAPRLVNSVARN* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01673 355 CDD F-box_AtFBL13-like 77 112 - -
Eupl04g01673 355 Pfam F-box domain 77 117 IPR001810 GO:0005515
Eupl04g01673 355 Gene3D - 9 153 - -
Eupl04g01673 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 170 IPR027417 -
Eupl04g01673 355 SMART fbox_2 80 120 IPR001810 GO:0005515
Eupl04g01673 355 PANTHER OS02G0105600 PROTEIN 73 341 - -
Eupl04g01673 355 Pfam Myosin head (motor domain) 14 150 IPR001609 GO:0003774|GO:0005524|GO:0016459
Eupl04g01673 355 SUPERFAMILY F-box domain 74 116 IPR036047 GO:0005515
Eupl04g01673 355 ProSiteProfiles F-box domain profile. 74 121 IPR001810 GO:0005515
Eupl04g01673 355 SUPERFAMILY RNI-like 219 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01673 Eupl-Chr4 31094870 31097631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01673 14 69 Myosins gene family AT1G50360 73.214 2.88e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01673 - - tss:122642821 177.948