LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl04g01673	ATGGCGAGCGGCACGGCGGTTCGGCGGCAAGGCCAGTCGGAACGGAAACCATTGGGGCTATTGTCTCTGTTGGAGGAGGAGTCCAATTTCCCAAATGGCACTCACTTAACATTTGCCATCAAGCTTAAGCAGCACTCGAATTCTAATTCATGTTTCATAGGAGAATGGGACAAAGCATTCTGTGTCTGCCATTATACAGGGGAGGTTGATGAGATGATAAAGGATCGGATTAGTGATTTGCCGGATGAAATTCTTTCCTCCATCTTATCGTTGTTGACGATGAAAGACGCAGCAAGAACTAGCAGACTTTCGCGCAGATGGAGATACCTCTGGAGGACATCTAGTCTCAACTTTGATGTTGCAAATATGAGAGGAAAAGACTACCCTGCCAGAAGATTCAGAACAAATATCACTGGCAAATATAGTAAAACACAGAAGAAGTTGCTACGGAAGGAAAGGTGTAGATTTGTAAAATGGGTTGATGAGATCTTGCAGCATCACCAACATCCAGAGATAAACGCATTAATGGTGCGCTTTAGTTTGGATAAAAAGTTTACTCCTCACATTGATCAATGGATTCATATTGCAGTAGCTAAGAGAGTTCGAGGGCTTGTTCTCAACTTGGCGAATTTTGATGCTAATATTGGTGTCAAAGGTGACAAACTTTATGATTTTCCTTGTTTTTTTACTCAAGAAAAGGGTTCCTCTTTGAAGTATTTGTATTTGAGAGCTTGCATCTTGAGACCTCCTCTTGATTTCAATGGTTTTAGCTCCCTTATAGACCTCACTTTGAATGAAGTTGATATAGCTGAACAACATATTGTTAATCTATTGTCGAACAGTTCAAACCTAGAACGGTTGAGCGTGTTGAACTGCTTGAAATTGGTTAATTTGAAAATCACTGGCTCATCCCTCAGACTGAAGTTCCTAAGCATAGCCTTCTGTATGTGTTTGGAGAAGGTAGAGATCTTTGACATACATCTCACTGAATTCAAATATGGGGGCCCCATGGTGAAGTTCTATTTCCAGAATGCTCCTCGGCTTGTGAACTCAGTTGCCCGTAACTAA	1068	0.4157	MASGTAVRRQGQSERKPLGLLSLLEEESNFPNGTHLTFAIKLKQHSNSNSCFIGEWDKAFCVCHYTGEVDEMIKDRISDLPDEILSSILSLLTMKDAARTSRLSRRWRYLWRTSSLNFDVANMRGKDYPARRFRTNITGKYSKTQKKLLRKERCRFVKWVDEILQHHQHPEINALMVRFSLDKKFTPHIDQWIHIAVAKRVRGLVLNLANFDANIGVKGDKLYDFPCFFTQEKGSSLKYLYLRACILRPPLDFNGFSSLIDLTLNEVDIAEQHIVNLLSNSSNLERLSVLNCLKLVNLKITGSSLRLKFLSIAFCMCLEKVEIFDIHLTEFKYGGPMVKFYFQNAPRLVNSVARN*	356

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl04g01673	355	CDD	F-box_AtFBL13-like	77	112	-	-
	Eupl04g01673	355	Pfam	F-box domain	77	117	IPR001810	GO:0005515
	Eupl04g01673	355	Gene3D	-	9	153	-	-
	Eupl04g01673	355	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	15	170	IPR027417	-
	Eupl04g01673	355	SMART	fbox_2	80	120	IPR001810	GO:0005515
	Eupl04g01673	355	PANTHER	OS02G0105600 PROTEIN	73	341	-	-
	Eupl04g01673	355	Pfam	Myosin head (motor domain)	14	150	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Eupl04g01673	355	SUPERFAMILY	F-box domain	74	116	IPR036047	GO:0005515
	Eupl04g01673	355	ProSiteProfiles	F-box domain profile.	74	121	IPR001810	GO:0005515
	Eupl04g01673	355	SUPERFAMILY	RNI-like	219	325	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl04g01673	Eupl-Chr4	31094870	31097631	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl04g01673	14	69	Myosins gene family	AT1G50360	73.214	2.88e-19	87.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl04g01673	-		-	tss:122642821	177.948

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