Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01649 ATGCATCATCAGCTTTTCCCAGCTTCCTTTTTCTTCCTATTCATCATCTTCTTCTTCTTCTTCTTCATTCTTCCAGGAGCTTTGTGTGTCACTGACGAGCAGTACTCAAACTGCAGTCGTCGGTTTGAGTGTGGAAACATCCAAAATGTCAGTTACCCTTTCTGGGGAAGCCCCCAGCCCAGTTATTGTGGCCTCCCCCAGTTCAAGCTCGAGTGCCAAGACGGATCACCTGTGATGGAGATTATGTCAGAAAGATACCGTGTTGTGAGGATCAATCATGAAAACCAATTTCTGACGATTGCTAAAATGGATTACTTGGACAGTACTTGTCCTCTGCGATTCGTAAACACGACCCTCCATTTTCTCTTCTATTATACTCCCCGTAATGACAACCTTACGTTGTTCTATGGTTGCTCGTCTAGGAATGTAACCTTGCTTCCCAATCAATTTAGTTGTCACATAAATGATACCACTGTTGACACTGGTTATTTCATCATCAACTCCATCCCATCAGATCAAAATCTTGTGAAATGCAACAATAGCGTCGTCGTTCCAGTTCTTCAAACAGCTGCCTTGGACCTCAAGAACAATTTATCAACTCTTAGTTCAGTTCTGAATGAAGGTTTTGAGGTACAATGGACTGTAGAGGACACACCATGTATGGAATGCACTGGGTCTGGTGGGCAATGCGGATATAACTTGACTTCTAGCCAACCCATCTGTTTTTGCCCAGATCACCATTATCTAGTGAGATGTCCAACGCCACCGGCTGCAACTATGCCTGGGCCCAAGGTTAATGTGGGAAAGAAGGTTGTAATAGCTGCATCAATCGCTGGAGTTTGCATTGTGGTGATGACAATAATTTTTTGCTCAAGGATGAAATCATCAGTAGACAACCCAATGGCCTTTTGGAAGAAGAAAGCAAAGAATGCTCAACATGTGGAGGCTTTTTTCAAGAATTATGGATCCTTAGGTCCAAAAAGATATAGTTCTTCATATGTCAAGAAAATGACTGATTCCTTCAAAGATAAATTGGGTCAAGGAGGCTATGGAAGTGTATACAAAGGAAAGCTACTTGATGGCCGTCTAGTGGCAGTGAAAGTATTGAATGAGTCCAAAGATAATGGAGAAGAATTTATTAATGAGGTTGTGAGCATTAGTATGACTTCCCATGTTAATATCGTCACTTTTCTAGGCTTCTGTTTTGAGGGGCCCAAAAGAGCTCTCATCTATGAGTTCATGCCCAATGGATCTCTTGAAAAGTTTATATATGACGAAAAATTACCAATGTCACATCCTCCCTTAGGATGGAAAAGACTATACCTAATTGCAGGTGGCATTGCTCGAGGCCTAGAGTACTTACACCGTGGTTGTAACACACGAATCCTACATCTTGACATAAAACCTCATAACATTCTTTTAGACCAAGAATTCTGTCCAAAGATCTCTGATTTTGGGCTTGCTAAACTATGCCCGAAAAAAGAGAGTATCGTTTCAATGATGGGTGCTAGAGGGACTGTGGGATATATTGCACCAGAACTGTTGTTTAGAAACATTGGAGGAGTCTCACACAAGTCAGACGTCTATAGTTATGGAATGATGGTTCTAGAGATGGTTGGGGGAACAAGGAATATTGAAGCAAGAAAGGATGATACTGATAATATATATTTTCCACATTGGATCCATATGCGTCTGGAATTAGACGAGGATCTTGAATTACATGGGATTATGACTGAAGAGGAAGAAGAAATTGCAAGGAAGATGATTTTAGTGAGTCTGTGGTGCACGCAAACAGATCCTTCCAGTCGCCCATCGATGAGTAGGGTGGTGGAAATGTTGGAAGGAAGCATTGGAGCATTGCAAGTTGCACCGAAGCCTTTTCCTTCTTCTCCTTCGAGATCACTAGAATGTTCTTCCTCCACATCTTTACAAACTTTTTCAAGTTCGTGA 1950 0.4169 MHHQLFPASFFFLFIIFFFFFFILPGALCVTDEQYSNCSRRFECGNIQNVSYPFWGSPQPSYCGLPQFKLECQDGSPVMEIMSERYRVVRINHENQFLTIAKMDYLDSTCPLRFVNTTLHFLFYYTPRNDNLTLFYGCSSRNVTLLPNQFSCHINDTTVDTGYFIINSIPSDQNLVKCNNSVVVPVLQTAALDLKNNLSTLSSVLNEGFEVQWTVEDTPCMECTGSGGQCGYNLTSSQPICFCPDHHYLVRCPTPPAATMPGPKVNVGKKVVIAASIAGVCIVVMTIIFCSRMKSSVDNPMAFWKKKAKNAQHVEAFFKNYGSLGPKRYSSSYVKKMTDSFKDKLGQGGYGSVYKGKLLDGRLVAVKVLNESKDNGEEFINEVVSISMTSHVNIVTFLGFCFEGPKRALIYEFMPNGSLEKFIYDEKLPMSHPPLGWKRLYLIAGGIARGLEYLHRGCNTRILHLDIKPHNILLDQEFCPKISDFGLAKLCPKKESIVSMMGARGTVGYIAPELLFRNIGGVSHKSDVYSYGMMVLEMVGGTRNIEARKDDTDNIYFPHWIHMRLELDEDLELHGIMTEEEEEIARKMILVSLWCTQTDPSSRPSMSRVVEMLEGSIGALQVAPKPFPSSPSRSLECSSSTSLQTFSSS* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01649 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Eupl04g01649 649 PANTHER RUST RESISTANCE KINASE LR10-RELATED 305 632 IPR045874 GO:0004672
Eupl04g01649 649 Gene3D Transferase(Phosphotransferase) domain 1 414 624 - -
Eupl04g01649 649 Pfam Protein kinase domain 342 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01649 649 Pfam Wall-associated receptor kinase galacturonan-binding 38 101 IPR025287 GO:0030247
Eupl04g01649 649 MobiDBLite consensus disorder prediction 624 649 - -
Eupl04g01649 649 ProSiteProfiles Protein kinase domain profile. 339 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01649 649 SMART serkin_6 339 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01649 649 Pfam Wall-associated receptor kinase C-terminal 172 245 IPR032872 -
Eupl04g01649 649 CDD STKc_IRAK 345 615 - -
Eupl04g01649 649 SUPERFAMILY Protein kinase-like (PK-like) 322 614 IPR011009 -
Eupl04g01649 649 Gene3D Phosphorylase Kinase; domain 1 314 413 - -
Eupl04g01649 649 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Eupl04g01649 649 FunFam PR5-like receptor kinase 414 625 - -
Eupl04g01649 649 MobiDBLite consensus disorder prediction 627 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01649 Eupl-Chr4 30321530 30334481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01649 19 626 Receptor kinase-like Gene Family AT5G38260 40.000 9.11e-148 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Eupl04g01649 Pkinase 5.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01649 - - vvi:100246408 730.324