Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01642 ATGGCGAAAACCGGTATCTGGTTTCGACATTTCGTTCTAGTTCTCTCTCTTATCCCCTTATCTCTCGTACATGCTTCTTTAAATCCGGATTTCAAAGCTTTAATGGCGTTCAAAACCGCTTCTGATACCTCTAACAAGCTCACTAGCTGGAACAAAACCGCCGAGCCATGCACTTGGTATGGCGTTTCCTGTCTCCAAAACCGCGTTTCTCATCTCGTTCTCGAAGGACTCGATCTCCACGGCAGTTTCAACTCTCTAACGTCTCTGAACCAGCTTCGCGTTTTGAGTCTCAAGCGAAACCACCTTTCAGGTCCCATTCCCGATCTTTCGAACCTCACTGCGCTTAAACTTATTTTTCTCTCTTATAATGAGTTCTCCGGCGAGATTCCGGAGTCGTTACTGTCACTTTTCCGTCTCTACCGGCTCGATCTGTCTTACAACAATCTCTCCGGTCAGATTCCGGCACAAATCAGCCATCTTACACATCTTCTTACTCTACGACTCGAAGAAAATCACTTTTCTGGGCCGATTTCGAGCTTAAATTTACCGAATCTGCAGGACTTCAATGTCTCCGGAAACCGCCTCTCAGGAGAAATCCCGAAAACCTTATCCGGTTTTCCTGAAACTGCTTTTGATCAAAATCCGGTTTTGTGCGGTTCGCCATTGCCGAGCTGCAAGAACATCGTCAGCGACCCGAGCAAGCCTGGATCTGACGGCGCTGTAGCCACTCCGTTAAGTCCGGTTAACGGAATCCCGACTGTTTCCTCGTCGCCGAGTCCGAAACCGGTCTCACCGTCGACTACATTGTCAAATACCCACCGTAGTGGAACCGGGAAGATGAGCGTACTCGCCGTGGTAGCGATAATAGTCGGCGATATTTTGGTGTTGACTCTGATTTCAGGCCTCTTATTCTGTTATTTCTGGAGAAATGTAGCGGGGAAAATGAGAGACGGCAAGGGCTCGCAGCTACTCGAAGGCGAAAAGATCGTCTACTCGTCGAGTCCGTACCCCTCGCAAGGCGGTTTCGAGAGAGGAAAGATGGTTTTCTTCGAAGGTGTAAAGAGGTTTGAGTTAGAGGATTTACTTAGAGCTTCGGCTGAAATGTTGGGGAAAGGCGGTTTTGGAACGGCGTACAAGGCGATTTTAGATGACGGTAACGTAGTTGCCGTTAAACGTCTTAAAGAAGCTCAGGTAGGCGGGAAACGTGAGTTCGAGCAGCATATGGAAGTGTTAGGACGGTTAAGGCACCCTAACATCGTTAGTTTGAAGGCTTATTACTACGCTAGAGACGAGAAGTTGCTGGTCTACGATTACATGCCTAACGGCAGCTTGTTTTGGCTTCTTCACGGTAACCGAGGCCCAGGTAGAACCCCACTAGACTGGACGACGAGGTTGAAGATCGCAGCTGGATCAGCTCGTGGGCTCGCCTTCATTCACCACTCGTGCCGGTCCCTGAAGCTCTCACACGGCAACATAAAGTCAACCAACGTTCTTCTCGACAAGGCCGGGAACGCCCGAGTGTCAGATTTTGGACTCTCCGTCTTTGCCTCCCCTGCTGCTGCACCTAGATCTAACGGCTACCGCGCACCAGAAGCATCAGACGGTCGAAAATTAATGCAGAAGGCTGATGTGTATGGTTTTGGTGTTTTGCTGCTAGAACTGTTGACAGGGAAGTGTCCGTTGGCTGTGGAGAATGGTGGGGTTGTGGATCTCCCAAGATGGGTTCAGTCGGTTGTGAGGGAGGAATGGACGGCTGAAGTGTTTGATCTGGAGCTGATGAGGTACAAGGATATAGAGGAGGAGATGGTTGGGTTACTGCAGATCGCAATGGCTTGCACTTCAGTTGCACCGGATCAACGGCCTCGGATGGGTTATGTGGTCAAAATGATCGACGAGATACGGGGCGTAGAGGTATCCCCCTCACATGAGTCATTTGACTCGGTGTCCGACTCGCCCTCCGTGTCTGAAGACACTGGTGGGGTGAGTCAGTGA 1992 0.5015 MAKTGIWFRHFVLVLSLIPLSLVHASLNPDFKALMAFKTASDTSNKLTSWNKTAEPCTWYGVSCLQNRVSHLVLEGLDLHGSFNSLTSLNQLRVLSLKRNHLSGPIPDLSNLTALKLIFLSYNEFSGEIPESLLSLFRLYRLDLSYNNLSGQIPAQISHLTHLLTLRLEENHFSGPISSLNLPNLQDFNVSGNRLSGEIPKTLSGFPETAFDQNPVLCGSPLPSCKNIVSDPSKPGSDGAVATPLSPVNGIPTVSSSPSPKPVSPSTTLSNTHRSGTGKMSVLAVVAIIVGDILVLTLISGLLFCYFWRNVAGKMRDGKGSQLLEGEKIVYSSSPYPSQGGFERGKMVFFEGVKRFELEDLLRASAEMLGKGGFGTAYKAILDDGNVVAVKRLKEAQVGGKREFEQHMEVLGRLRHPNIVSLKAYYYARDEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGSARGLAFIHHSCRSLKLSHGNIKSTNVLLDKAGNARVSDFGLSVFASPAAAPRSNGYRAPEASDGRKLMQKADVYGFGVLLLELLTGKCPLAVENGGVVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMACTSVAPDQRPRMGYVVKMIDEIRGVEVSPSHESFDSVSDSPSVSEDTGGVSQ* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01642 663 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Eupl04g01642 663 Gene3D Ribonuclease Inhibitor 181 225 IPR032675 -
Eupl04g01642 663 MobiDBLite consensus disorder prediction 641 663 - -
Eupl04g01642 663 SUPERFAMILY L domain-like 49 219 - -
Eupl04g01642 663 Gene3D Phosphorylase Kinase; domain 1 343 438 - -
Eupl04g01642 663 MobiDBLite consensus disorder prediction 229 275 - -
Eupl04g01642 663 Pfam Protein kinase domain 367 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01642 663 CDD STKc_IRAK 369 633 - -
Eupl04g01642 663 ProSiteProfiles Protein kinase domain profile. 363 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01642 663 MobiDBLite consensus disorder prediction 642 663 - -
Eupl04g01642 663 Gene3D Ribonuclease Inhibitor 28 178 IPR032675 -
Eupl04g01642 663 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 439 643 - -
Eupl04g01642 663 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Eupl04g01642 663 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 20 636 IPR046959 -
Eupl04g01642 663 ProSiteProfiles Leucine-rich repeat profile. 91 113 IPR001611 GO:0005515
Eupl04g01642 663 FunFam pollen receptor-like kinase 1 336 438 - -
Eupl04g01642 663 FunFam Nuclear pore complex protein NUP107 27 179 - -
Eupl04g01642 663 MobiDBLite consensus disorder prediction 248 275 - -
Eupl04g01642 663 Gene3D Transferase(Phosphotransferase) domain 1 439 650 - -
Eupl04g01642 663 SUPERFAMILY Protein kinase-like (PK-like) 367 630 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01642 Eupl-Chr4 29962840 29966778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01642 30 660 Receptor kinase-like Gene Family AT1G68400 65.688 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Eupl04g01642 Pkinase 1.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01642 - - nnu:104602585 1031.94