Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01641 ATGGCGACACCAGTAACGGGTCTTCAACACAGAGATGGAGGTATTGCTTTAATGGCTGGGCCTGTAAATCCAGTGGATCCTTCTTCGTCTTCTAAGTCCTGCTTGAAGAATTTTTCTCTAAAATCCCCAATCCTTATCTTCCTGTACTTCCACAAAGCCATCCGGTCCGAGCTCGATGGGCTTCACCGTGCGGCCATGGCGTTCGCGACTAGCCCAACCGGCGACATCGGCCCGTTGTTCGAGCGCTACCACTTCCTTCGGGCAATCTACAAGCACCATTGCAATGCTGAGGATGAGGTCATCTTTCCTGCGCTTGATATACGTGTGAAGAATGTGGCACGAACGTACTCCCTAGAACACAAGGGGGAGATTGATCTTTTTGATCAGTTGTTTGAGCTGCTGAGTTCAAATGTGCAAAATGATGAAATCTTTCGGAGAGAGTTAGCTTCTTGTACAGGAGCCCTTCAAACATCGGTGAGCCAGCACATGTCCAAGGAGGAGGAGCAGGTCTTCCCCTTGCTAATTGAGAAATTCTCATTCCAAGAGCAGGCATCATTGGTCTGGCAGTTTTTGTGCAGCATTCCTGTGAATATGATGGCAGAATTCCTTCCATGGCTTTCTTCTTCTATTTCATCTGATGAGCATCAGGATATGCTGAAATGCTTGTGTAAGATAGTCCCAGAAGAGAAGCTACTTCAACAGGTTATATTCACCTGGATGGAAGGGGGAAAGATATCCAATACACGGAAAAGTTGTAAAGATGGTTCTCAGTTTCGATGTTGTGAAGATTTTGGGACTGATAAATTAGTTGAGCAAACTGAAAAGGGGCCATGTGCATGTGAATCTTCCAATATTGGGAAAAGGAAATATCTGGAGTCAAACTTTGAAGTTACTGATTTTACTGGGGCACATCCAATAAATGAAATATTGCATTGGCATAATGCTATAAAAAAAGAGTTGAAGGATATAGCTGAGGAGGCAAGGAAGATACAACTTTGTGGAGATTTTTCTGATTTATCAGCCTTCAATGAGAGGCTACAATTTATCGCTGAAGTTTGCATCTTTCACAGTATTGCTGAAGACAAGGTTATATTCCCTGCAGTAGATGGGAAACTCTCTTTTGCCCAGGAGCACGCTGAGGAAGAAAGTCAATTTGAGAAGTTTAGGTGCTTGATAGAAAGTATTCAAAGTGCTGGAGCCAATTCAACGTCAGCCGAATTTTACACAAAGCTATGCTTACATGCTGAACAAATAATGGACCGCATACAGAAGCACTTCCACAGTGAGGAAGTTCAGGTACTTCCACTTGCTCGGAAGCATTTTAGCCCCGAAAGACAGCGAGAACTTCTGTATCAGAAATTATGTGTAATGCCTTTGAAATTGGTGGAGCGTGTCTTACCATGGCTGGTAGGATCACTAAGTGAAGTGGAAGCCAGGTCTTTTCTTCAAAATATGCATTTGGCAGCTCCAGCATCTGATACCGCACTGGTTACACTTTTCTCTGGCTGGGCATGCAAGGGTCGTTCCCAGGATGCATGTTTGTCTTCAAGGGCAATTGGTTGCTGTCTGGGAAAAAAATTGACTGGAATTGAAGAAGATTTTAGTCGATCATTCTGTGCACGTGCCTCTTCCTTGTCTACTAAGGGAAAATCATCAATGGTTCAAGCAGATGCCAATAAAAGGCCAGTTAAACGTGGCAACTTGTCAGGATTATGTGAAATTAACAATGCTTGTGACCTGCCACAGCCAGACAATGTAAATAGCCGGAAACTAACTTATAGTAATCAAGCTTGCTGTGTACCTGGTTTAGGAGTGAACAGCAGTAACCTAGGAATAAGTTCAATTGCTGCTGTGAAGTCTATGCGTTCCTTGTCTTTCAGTCCTTCTGCACCTTCTCTTAATTCCAGTCTTTTTATCTGGGAAACAGATAATAGCTCTTCCGACACTGGGTCTGCAACGCGACCTATTGACAACATATTCAAATTTCATAAAGCCATCTGCAAGGACTTGGAGTATTTGGATGTTGAATCTGGAAAGCTTAATGGTTGTGATGAGAGATTCCTTCGGCAGTTCAGTGGAAGATTTCGTCTGTTGTGGGGTTTATATAGAGCACATAGTAATGCTGAGGATGCGATAGTTTTTCCAGCTTTAGAATCCAAAGAGGCTCTTCATAACGTGAGCCACTCCTACACTCTAGACCACAAGCAAGAGGAAAAACTATTTGAAGATATTTCATCTGTTCTTTGTGAGCTATCACAACTTCATCAAGGCTTGAACAGGACCAATCTGTCTGAAGATTCAACTGGAAGTAACTTTGATTCTTCTGGCGGTCATGGTAATGATTGTATGCGGAAGTACAATGACCTTGCAACAAAGCTTCAAGGCATGTGCAAGTCTATAAGAGTCTCACTGGACCAACATGTTTTTAGGGAAGAACTTGAGCTCTGGCCATTATTTGACAGACATTTTTCTGTGGAAGAGCAGGACAAAATTGTTGGCCGAATAATTGGGACTACAGGTGCGGAGGTGCTCCAGTCAATGTTACCTTGGGTAACTGCTGCACTTACTCAGGAGGAACAGAATAAAATGATGGACACATGGAAGCAGGCAACTAAAAACACAATGTTCAGTGAGTGGCTTAATGAATGGTGGAAAGGAACTCCTGTGGGATCTTTACAGACATCAACATTGGAAAGTAGTATATCTCAAGAAGGCACTGATATCCAAGAAAGCCTGGACCATAGTGATCAGATGTTCAAGCCTGGCTGGAAAGATATTTTCCGGATGAATCAGAATGAGCTCGAGTCGGAGATAAGAAAGGTTTCACGGGACTCAACTCTCGATCCAAGGAGAAAAGCATATCTGATACAAAATCTTATGACTAGTCGCTGGATAGCTGCTCAGCAGAAGTTACCTCAAGCAAAAACAGGGGAAACTACAAATGGTGAAGATGTTCCCGGATGCTCTCCATCGTTTCGAGATCCAGAGAAGCAAGTGTTTGGGTGTGACCACTACAAAAGAAACTGCAAACTACTTGCTGCTTGCTGTAACAAATTATTCGCATGCAGGTTCTGCCATGATAAAGTCAGCGATCATTCTATGGATAGGAAAGCGACATCAGAAATGATGTGTATGCGCTGCCTGAAGATTCAGGCAGTTGGACCAATTTGCACAACACCTTCCTGCAATGGACTTTCAATGGCAAAACACTATTGCAATATCTGCAAATTTTTTGATGATGAAAGGACAGTATACCATTGCCCATTTTGCAAGTTATGCCGCCTTGGGAAGGGGCTCGGTATTGACTTCTATCATTGCATGAAATGCAATTGTTGCCTAGCGATGAAGTTAGAGGACCACAAGTGCCGGGAAAAAGGTCTTGAAACAAACTGGCCCCATTTGCTGTGA 3408 0.4322 MATPVTGLQHRDGGIALMAGPVNPVDPSSSSKSCLKNFSLKSPILIFLYFHKAIRSELDGLHRAAMAFATSPTGDIGPLFERYHFLRAIYKHHCNAEDEVIFPALDIRVKNVARTYSLEHKGEIDLFDQLFELLSSNVQNDEIFRRELASCTGALQTSVSQHMSKEEEQVFPLLIEKFSFQEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMLKCLCKIVPEEKLLQQVIFTWMEGGKISNTRKSCKDGSQFRCCEDFGTDKLVEQTEKGPCACESSNIGKRKYLESNFEVTDFTGAHPINEILHWHNAIKKELKDIAEEARKIQLCGDFSDLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGKLSFAQEHAEEESQFEKFRCLIESIQSAGANSTSAEFYTKLCLHAEQIMDRIQKHFHSEEVQVLPLARKHFSPERQRELLYQKLCVMPLKLVERVLPWLVGSLSEVEARSFLQNMHLAAPASDTALVTLFSGWACKGRSQDACLSSRAIGCCLGKKLTGIEEDFSRSFCARASSLSTKGKSSMVQADANKRPVKRGNLSGLCEINNACDLPQPDNVNSRKLTYSNQACCVPGLGVNSSNLGISSIAAVKSMRSLSFSPSAPSLNSSLFIWETDNSSSDTGSATRPIDNIFKFHKAICKDLEYLDVESGKLNGCDERFLRQFSGRFRLLWGLYRAHSNAEDAIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISSVLCELSQLHQGLNRTNLSEDSTGSNFDSSGGHGNDCMRKYNDLATKLQGMCKSIRVSLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTAALTQEEQNKMMDTWKQATKNTMFSEWLNEWWKGTPVGSLQTSTLESSISQEGTDIQESLDHSDQMFKPGWKDIFRMNQNELESEIRKVSRDSTLDPRRKAYLIQNLMTSRWIAAQQKLPQAKTGETTNGEDVPGCSPSFRDPEKQVFGCDHYKRNCKLLAACCNKLFACRFCHDKVSDHSMDRKATSEMMCMRCLKIQAVGPICTTPSCNGLSMAKHYCNICKFFDDERTVYHCPFCKLCRLGKGLGIDFYHCMKCNCCLAMKLEDHKCREKGLETNWPHLL* 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01641 1135 Gene3D nmb1532 protein domain like 651 890 - -
Eupl04g01641 1135 SUPERFAMILY CHY zinc finger-like 995 1058 IPR037274 GO:0008270
Eupl04g01641 1135 SUPERFAMILY ARM repeat 126 471 IPR016024 -
Eupl04g01641 1135 CDD Hr-like 46 172 - -
Eupl04g01641 1135 SUPERFAMILY Zinc hairpin stack 1068 1123 IPR037275 -
Eupl04g01641 1135 CDD Hr-like 659 817 - -
Eupl04g01641 1135 ProSiteProfiles Zinc finger CTCHY-type profile. 1067 1130 IPR017921 -
Eupl04g01641 1135 CDD Hr-like 308 435 - -
Eupl04g01641 1135 ProSiteProfiles Zinc finger CHY-type profile. 995 1064 IPR008913 GO:0008270
Eupl04g01641 1135 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 698 1132 - -
Eupl04g01641 1135 Gene3D nmb1532 protein domain like 42 192 - -
Eupl04g01641 1135 Gene3D nmb1532 protein domain like 306 454 - -
Eupl04g01641 1135 Pfam CHY zinc finger 1002 1077 IPR008913 GO:0008270
Eupl04g01641 1135 Pfam Hemerythrin HHE cation binding domain 304 437 IPR012312 -
Eupl04g01641 1135 Pfam Hemerythrin HHE cation binding domain 655 818 IPR012312 -
Eupl04g01641 1135 Pfam Hemerythrin HHE cation binding domain 48 174 IPR012312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01641 Eupl-Chr4 29876096 29896175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01641 1 1132 C2H2 Transcription Factor Family AT3G18290 64.721 0.0 1454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01641 K16276 - nnu:104609887 1856.26