Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01640 ATGGCGACACCAGTAACGGGTCTTCAACACAGAGATGGGGGTATTGCTTTAATGGCTGGGCCTGTAAATCCAGTGGATCCTTCTTCGTCTTCTAAGTCCTGCTTGAAGAATTTTTCTCTAAAATCCCCAATCCTTATCTTCCTGTACTTCCACAAAGCCATCCGGTCCGAGCTCGATGGGCTTCACCGTGCGGCCATGGCGTTCGCGACTAGCCCAACCGGCGACATCGGCCCGTTGTTCGAGCGCTACCACTTCCTTCGGGCAATCTACAAGCACCATTGCAATGCTGAGGATGAGGTCATCTTTCCTGCGCTTGATATACGTGTGAAGAATGTGGCACGAACGTACTCCCTAGAACACAAGGGGGAGATTGATCTTTTTGATCAGTTGTTTGAGCTGCTGAGTTCAAATGTGCAAAATGATGAAATCTTTCGGAGAGAGTTAGCTTCTTGTACAGGAGCCCTTCAAACATCGGTGAGCCAGCACATGTCCAAGGAGGAGGAGCAGGTCTTCCCCTTGCTAATTGAGAAATTCTCATTCCAAGAGCAGGCATCATTGGTCTGGCAGTTTTTGTGCAGCATTCCTGTGAATATGATGGCAGAATTCCTTCCATGGCTTTCTTCTTCTATTTCATCTGATGAGCATCAGGATATGCTGAAATGCTTGTGTAAGATAGTCCCAGAAGAGAAGCTACTTCAACAGGTTATATTCACCTGGATGGAAGGGGGAAAGATATCCAATACACGGAAAAGTTGTAAAGATGGTTCTCAGTTTCGATGTTGTGAAGATTTTGGGACTGATAAATTAGTTGAGCAAACTGAAAAGGGGCCATGTGCATGTGAATCTTCCAATATTGGGAAAAGGAAATATCTGGAGTCAAACTTTGAAGTTACTGATTTTACTGGGGCACATCCAATAAATGAAATATTGCATTGGCATAATGCTATAAAAAAAGAGTTGAAGGATATAGCTGAGGAGGCAAGGAAGATACAACTTTGTGGAGATTTTTCTGATTTATCAGCCTTCAATGAGAGGCTACAATTTATCGCTGAAGTTTGCATCTTTCACAGTATTGCTGAAGACAAGGTTATATTCCCTGCAGTAGATGGGAAACTCTCTTTTGCCCAGGAGCACGCTGAGGAAGAAAGTCAATTTGAGAAGTTTAGGTGCTTGATAGAAAGTATTCAAAGTGCTGGAGCCAATTCAACGTCAGCCGAATTTTACACAAAGCTATGCTTACATGCTGAACAAATAATGGACCGCATACAGAAGCACTTCCACAGTGAGGAAGTTCAGGTACTTCCACTTGCTCGGAAGCATTTTAGCCCCGAAAGACAGCGAGAACTTCTGTATCAGAAATTATGTGTAATGCCTTTGAAATTGGTGGAGCGTGTCTTACCATGGCTGGTAGGATCACTAAGTGAAGTGGAAGCCAGGTCTTTTCTTCAAAATATGCATTTGGCAGCTCCAGCATCTGATACCGCACTGGTTACACTTTTCTCTGGCTGGGCATGCAAGGGTCGTTCCCAGGATGCATGTTTGTCTTCAAGGGCAATTGGTTGCTGTCTGGGAAAAAAATTGACTGGAATTGAAGAAGATTTTAGTCGATCATTCTGTGCACGTGCCTCTTCCTTGTCTACTAAGGGAAAATCATCAATGGTTCAAGCAGATGCCAATAAAAGGCCAGTTAAACGTGGCAACTTGTCAGGATTATGTGAAATTAACAATGCTTGTGACCTGCCACAGCCAGACAATGTAAATAGCCGGAAACTAACTTATAGTAATCAAGCTTGCTGTGTACCTGGTTTAGGAGTGAACAGCAGTAACCTAGGAATAAGTTCAATTGCTGCTGTGAAGTCTATGCGTTCCTTGTCTTTCAGTCCTTCTGCACCTTCTCTTAATTCCAGTCTTTTTATCTGGGAAACAGATAATAGCTCTTCCGACACTGGGTCTGCAACGCGACCTATTGACAACATATTCAAATTTCATAAAGCCATCTGCAAGGACTTGGAGTATTTGGATGTTGAATCTGGAAAGCTTAATGGTTGTGATGAGAGATTCCTTCGGCAGTTCAGTGGAAGATTTCGTCTGTTGTGGGGTTTATATAGAGCACATAGTAATGCTGAGGATGCGATAGTTTTTCCAGCTTTAGAATCCAAAGAGGCTCTTCATAACGTGAGCCACTCCTACACTCTAGACCACAAGCAAGAGGAAAAACTATTTGAAGATATTTCATCTGTTCTTTGTGAGCTATCACAACTTCATCAAGGCTTGAACAGGACCAATCTGTCTGAAGATTCAACTGGAAGTAACTTTGATTCTTCTGGCGGTCATGGTAATGATTGTATGCGGAAGTACAATGACCTTGCAACAAAGCTTCAAGGCATGTGCAAGTCTATAAGAGTCTCACTGGACCAACATGTTTTTAGGGAAGAACTTGAGCTCTGGCCATTATTTGACAGACATTTTTCTGTGGAAGAGCAGGACAAAATTGTTGGCCGAATAATTGGGACTACAGGTGCGGAGGTGCTCCAGTCAATGTTACCTTGGGTAACTGCTGCACTTACTCAGGAGGAACAGAATAAAATGATGGACACATGGAAGCAGGCAACTAAAAACACAATGTTCAGTGAGTGGCTTAATGAATGGTGGAAAGGAACTCCTGTGGGATCTTTACAGACATCAACATTGGAAAGTAGTATATCTCAAGAAGGCACTGATATCCAAGAAAGCCTGGACCATAGTGATCAGATGTTCAAGCCTGGCTGGAAAGATATTTTCCGGATGAATCAGAATGAGCTCGAGTCGGAGATAAGAAAGGTTTCACGGGACTCAACTCTCGATCCAAGGAGAAAAGCATATCTGATACAAAATCTTATGACTAGTCGCTGGATAGCTGCTCAGCAGAAGTTACCTCAAGCAAAAACAGGGGAAACTACAAATGGTGAAGATGTTCCCGGATGCTCTCCATCGTTTCGAGATCCAGAGAAGCAAGTGTTTGGGTGTGACCACTACAAAAGAAACTGCAAACTACTTGCTGCTTGCTGTAACAAATTATTCGCATGCAGGTTCTGCCATGATAAAGTCAGCGATCATTCTATGGATAGGAAAGCGACATCAGAAATGATGTGTATGCGCTGCCTGAAGATTCAGGCAGTTGGACCAATTTGCACAACACCTTCCTGCAATGGACTTTCAATGGCAAAACACTATTGCAATATCTGCAAATTTTTTGATGATGAAAGGACAGTATACCATTGCCCATTTTGCAATTTATGCCGCCTTGGGAAGGGGCTCGGTATTGACTTCTATCATTGCATGAAATGCAATTGTTGCCTAGCGATGAAGTTAGAGGACCACAAGTGCCGGGAAAAAGGTCTTGAAACAAACTGCCCCATTTGCTGTGATTTTTTGTTCACGTCAAGTGCTACAGTCAAAGCGCTTCCCTGTGGCCATTATATGCATTCAGCTTGTTTTCAGGCATACACTTGCAGTCACTACACCTGTCCAATATGTAGCAAATCCTTGGGAGATATGGCGGTCTACTTCGGCATGCTTGATGCTTTGTTGGCTGCTGAAGAACTTCCAGAAGAATACAGGGATCGATGTCAGGATATACTGTGCAATGACTGCGATAAAAAGGGAGTGGCACGCTTCCACTGGTTGTACCATAAGTGCAGTTTTTGTGGATCTTACAACACCAGGGTGATCAAGAGCGATTCGGCAAATTCCGACTGCTCAACGTCAAACTAA 3753 0.4341 MATPVTGLQHRDGGIALMAGPVNPVDPSSSSKSCLKNFSLKSPILIFLYFHKAIRSELDGLHRAAMAFATSPTGDIGPLFERYHFLRAIYKHHCNAEDEVIFPALDIRVKNVARTYSLEHKGEIDLFDQLFELLSSNVQNDEIFRRELASCTGALQTSVSQHMSKEEEQVFPLLIEKFSFQEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMLKCLCKIVPEEKLLQQVIFTWMEGGKISNTRKSCKDGSQFRCCEDFGTDKLVEQTEKGPCACESSNIGKRKYLESNFEVTDFTGAHPINEILHWHNAIKKELKDIAEEARKIQLCGDFSDLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGKLSFAQEHAEEESQFEKFRCLIESIQSAGANSTSAEFYTKLCLHAEQIMDRIQKHFHSEEVQVLPLARKHFSPERQRELLYQKLCVMPLKLVERVLPWLVGSLSEVEARSFLQNMHLAAPASDTALVTLFSGWACKGRSQDACLSSRAIGCCLGKKLTGIEEDFSRSFCARASSLSTKGKSSMVQADANKRPVKRGNLSGLCEINNACDLPQPDNVNSRKLTYSNQACCVPGLGVNSSNLGISSIAAVKSMRSLSFSPSAPSLNSSLFIWETDNSSSDTGSATRPIDNIFKFHKAICKDLEYLDVESGKLNGCDERFLRQFSGRFRLLWGLYRAHSNAEDAIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISSVLCELSQLHQGLNRTNLSEDSTGSNFDSSGGHGNDCMRKYNDLATKLQGMCKSIRVSLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTAALTQEEQNKMMDTWKQATKNTMFSEWLNEWWKGTPVGSLQTSTLESSISQEGTDIQESLDHSDQMFKPGWKDIFRMNQNELESEIRKVSRDSTLDPRRKAYLIQNLMTSRWIAAQQKLPQAKTGETTNGEDVPGCSPSFRDPEKQVFGCDHYKRNCKLLAACCNKLFACRFCHDKVSDHSMDRKATSEMMCMRCLKIQAVGPICTTPSCNGLSMAKHYCNICKFFDDERTVYHCPFCNLCRLGKGLGIDFYHCMKCNCCLAMKLEDHKCREKGLETNCPICCDFLFTSSATVKALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCDKKGVARFHWLYHKCSFCGSYNTRVIKSDSANSDCSTSN* 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01640 1250 Pfam Zinc-ribbon 1178 1235 IPR039512 -
Eupl04g01640 1250 SUPERFAMILY Zinc hairpin stack 1068 1123 IPR037275 -
Eupl04g01640 1250 CDD Hr-like 46 172 - -
Eupl04g01640 1250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1126 1175 IPR013083 -
Eupl04g01640 1250 Pfam Ring finger domain 1130 1172 IPR001841 -
Eupl04g01640 1250 SUPERFAMILY CHY zinc finger-like 995 1058 IPR037274 GO:0008270
Eupl04g01640 1250 CDD Hr-like 659 817 - -
Eupl04g01640 1250 SUPERFAMILY RING/U-box 1130 1176 - -
Eupl04g01640 1250 Gene3D - 1202 1245 - -
Eupl04g01640 1250 ProSiteProfiles Zinc finger RING-type profile. 1131 1173 IPR001841 -
Eupl04g01640 1250 FunFam Zinc finger protein-related isoform 1 1126 1175 - -
Eupl04g01640 1250 Gene3D nmb1532 protein domain like 651 890 - -
Eupl04g01640 1250 Pfam Hemerythrin HHE cation binding domain 655 818 IPR012312 -
Eupl04g01640 1250 Pfam Hemerythrin HHE cation binding domain 48 174 IPR012312 -
Eupl04g01640 1250 Pfam Hemerythrin HHE cation binding domain 304 437 IPR012312 -
Eupl04g01640 1250 SMART ring_2 1131 1172 IPR001841 -
Eupl04g01640 1250 CDD Hr-like 308 435 - -
Eupl04g01640 1250 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 698 1244 - -
Eupl04g01640 1250 ProSiteProfiles Zinc finger CHY-type profile. 995 1064 IPR008913 GO:0008270
Eupl04g01640 1250 ProSiteProfiles Zinc finger CTCHY-type profile. 1067 1130 IPR017921 -
Eupl04g01640 1250 CDD RING-H2_Pirh2-like 1130 1173 - -
Eupl04g01640 1250 SUPERFAMILY ARM repeat 126 471 IPR016024 -
Eupl04g01640 1250 Gene3D nmb1532 protein domain like 42 192 - -
Eupl04g01640 1250 Gene3D nmb1532 protein domain like 306 454 - -
Eupl04g01640 1250 Pfam CHY zinc finger 1002 1077 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01640 Eupl-Chr4 29838285 29859384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01640 1 1250 C2H2 Transcription Factor Family AT3G18290 66.667 0.0 1678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01640 K16276 - msin:131235242 2087