Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01622 ATGTCTACTGTTACTAAGAGGAGGTACAGTTATGATGAAGAAGATATTGAGCTAAGAAGAGGACCATGGACCCTTGAAGAAGACACTCTTCTCATCCACTACATTGCTTCTCATGGTGAAGGTCGCTGGAATCTGTTAGCAAAATCTTCAGGATTGAAGAGAACTGGCAAGAGTTGCAGATTGAGATGGTTGAATTACTTGAAACCGGACGTAAAACGCGGAAACCTTTCTCCAGAAGAACAGATCTTGATTCTTGATCTCCATTCCAAGTGGGGTAACAGGTGGTCTAGGATTGCACAACATCTACCGGGAAGAACAGACAATGAAATAAAGAACTACTGGAGAACAAGGGTGCAGAAACAAGCCCGACAGCTCAAGATCGACGCTAATAGCACGAGATTCCAAGATGCGGTCCGATGTTTCTGGATGCCTAGATTGCTTCAGAAGATGGAATCATCTCGTTCTATATCTTCCTCAACTATGAAATCACAAAGCTTGTCAACTCCAAACCAGAACCCTCAGGTATCATTAGAAGCACCACCAGCATCACAAGGGTCTCTCATCATAATCGATCCGATAAAGAATTTCACTCATCAAGAGAAGAATTCAAGCTCAGAGAACTGCACTAGCCCAAGCAACTCTTCTTCAGAGTCCATGAACATCTCCCAACTCCCTGAAATTTCAGGATACCCAACAAGTCCTCATGCTTTTGGCAACATTACCTACAACCCATTTGTGAAGGATTACTATGAGGACAACAATAGCTATGATATGGAAGCCTTCAACATGGCTTCCATGTCAGCACCAACGGGCTTCAACAATTCGATCTCTGATTCCCACATGGTGGAGAGTAATTGTGTCGATGATGAGGTGGCAGATAGTCTCTGGAACATGGATGAGTTATGGCAGTTTAGAAAATTACAAGAGAGGGACAGATAG 939 0.4334 MSTVTKRRYSYDEEDIELRRGPWTLEEDTLLIHYIASHGEGRWNLLAKSSGLKRTGKSCRLRWLNYLKPDVKRGNLSPEEQILILDLHSKWGNRWSRIAQHLPGRTDNEIKNYWRTRVQKQARQLKIDANSTRFQDAVRCFWMPRLLQKMESSRSISSSTMKSQSLSTPNQNPQVSLEAPPASQGSLIIIDPIKNFTHQEKNSSSENCTSPSNSSSESMNISQLPEISGYPTSPHAFGNITYNPFVKDYYEDNNSYDMEAFNMASMSAPTGFNNSISDSHMVESNCVDDEVADSLWNMDELWQFRKLQERDR* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01622 312 MobiDBLite consensus disorder prediction 153 181 - -
Eupl04g01622 312 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Eupl04g01622 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Eupl04g01622 312 FunFam Myb transcription factor 20 72 - -
Eupl04g01622 312 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Eupl04g01622 312 CDD SANT 77 116 IPR001005 -
Eupl04g01622 312 Gene3D - 17 73 - -
Eupl04g01622 312 MobiDBLite consensus disorder prediction 199 227 - -
Eupl04g01622 312 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 212 IPR044676 GO:0003700|GO:0006355|GO:0043565
Eupl04g01622 312 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Eupl04g01622 312 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Eupl04g01622 312 CDD SANT 22 67 IPR001005 -
Eupl04g01622 312 SMART sant 72 120 IPR001005 -
Eupl04g01622 312 SMART sant 19 69 IPR001005 -
Eupl04g01622 312 FunFam MYB transcription factor 77 140 - -
Eupl04g01622 312 Gene3D - 77 121 - -
Eupl04g01622 312 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Eupl04g01622 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01622 Eupl-Chr4 29422706 29426439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01622 15 306 MYB Transcription Factor Family AT1G68320 49.664 7.40e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl04g01622 Myb_DNA-binding 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01622 K09422 - nnu:104602303 399.053