Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01621 ATGCAGGAACCTCAAGATCGAGGAGATTTGCAGAGCTTGAAGCCATCTCTCTCTTTCTTAGAGATTTATTCAAACATGGAACTAATAAACCAGCTTGCAGAGCTGAACCCAAGTGTGTTGGAGAATCCCAGCTTGAGTCAACAGAGCTTCATGGGTTTCTCTAATGACAATTTCTTGGTTCAACAACAACCCGAATTCCCCATTAACTTTTCTGATAATCTTCAGCATATTTTCCATACCGACGATTCGAATGCGATCCCAGTTGTTCAGTCTGTGGCTCAAGCTGAAGATGTTCTCCATGGAAGCAAGAAGCGAAAGGTGATGGAGGCATCAGAGAGCAGCTCAGGGAACTCTTCTACCCCAGTTTCGAAAATTGGGTTGGGAGGAGACAAAAATATTAAGAGAAAAAATTGCTTAGGGAGAGGAAAGAAAGGCAGGAACAATGAGAAAGAAGTGGAGAAACCAAAGGAAGTGATTCATGTCAGAGCAAGAAGAGGCCAAGCTACTGACAGTCACAGTTTAGCAGAAAGGGTAAGAAGAGAGAAGATCAATGAGAGACTAAGATGCCTACAGGACATTGTTCCAGGATGCTACAAGACGATGGGAATGGCGGTAATGTTGGACGAGATAATCAATTATGTTCAATCGTTACAAAACCAGGTCGAGTTTCTTTCTATGAAGCTTACAGCAGCCAGTTCTTTCTATGATTTCAACTTGGACATGGAAGCTACACAAACAATGCAGGGGACAAATGCATATGAGGTCCAGGATATGGAGAGGTTGGTGAAGGAAGGATATGGAGGACTCACTTGCTTCCACTCAACATGGCCCTTTTGA 837 0.4325 MQEPQDRGDLQSLKPSLSFLEIYSNMELINQLAELNPSVLENPSLSQQSFMGFSNDNFLVQQQPEFPINFSDNLQHIFHTDDSNAIPVVQSVAQAEDVLHGSKKRKVMEASESSSGNSSTPVSKIGLGGDKNIKRKNCLGRGKKGRNNEKEVEKPKEVIHVRARRGQATDSHSLAERVRREKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSFYDFNLDMEATQTMQGTNAYEVQDMERLVKEGYGGLTCFHSTWPF* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01621 278 SMART finulus 173 223 IPR011598 GO:0046983
Eupl04g01621 278 MobiDBLite consensus disorder prediction 136 155 - -
Eupl04g01621 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 235 IPR036638 GO:0046983
Eupl04g01621 278 MobiDBLite consensus disorder prediction 104 127 - -
Eupl04g01621 278 Gene3D - 164 235 IPR036638 GO:0046983
Eupl04g01621 278 MobiDBLite consensus disorder prediction 111 125 - -
Eupl04g01621 278 CDD bHLH_AtBPE_like 157 240 - -
Eupl04g01621 278 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 52 241 IPR024097 GO:0006355
Eupl04g01621 278 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983
Eupl04g01621 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 217 IPR011598 GO:0046983
Eupl04g01621 278 FunFam transcription factor BEE 3-like 164 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01621 Eupl-Chr4 29335422 29339321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01621 19 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 43.893 4.47e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl04g01621 HLH 2.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01621 - - ming:122058368 369.392