Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01604 ATGGCGTCTGCAGCACCTTCTCCAACTTCTTCTCCTTCCACAGTCCCCCCCGCGGCTTCCACTACTAGTCCACCACCACCTTCAACTACCTCCCCTTCTCCGTCAGACCCTTCAACAACTTCACCACCTCCCACACCTTCTCAGCCACCACCACCTTCTATTAGTCCTCCTCCTCCTTCAGACTCTTCAACACCTTCACCACCTCCTACAGTTTCTCAGTCCAATGTGACTTCGGATCCACCGGCCCCTACAATCCCTTCTACTCCTTCATCCCCACCACCTCAATCTCCTCCTCCCACTGTTCCAGCTGCTCCTCCTCCAGTACTTGAATCGCCTCCTGCACCACCACCACCTCCTCTTCCCACTCCAGCACCACTGACTTCTCCGCCGGTACTCACACCGCCACAATCTCCACCTCGTGCCCCTCCTCCAGATGTGCCTTCACCACCTCCACCTGCATTATCATCTCAACCGCCCGCCACTGGAAATTCCCCTCCCCCAGTTTCCCATTCACCTCCTCCAGCATTATCACCTCCACCACCCGCAGTTTCCCCGTCACCTCCTCCTCCTCGAGCAGTCTCACCACCTTCTCCACCTTCATCAGCTGTCTCTCCTCCTCCTCCCGCTAATTCTGCACCCCCATTGCCTTCCAATTCTCCTCCGCCACCCTCAGCAAATCCACCTAAAAATTCACCTCCACCTCCATCTCCTAGGCTTACACCTCCTGCTCCCTCTGGTTCTCAACCAGTATCTCCACCTTCCCCAAATTCCCCACCCAGATCATCACCACCACCCAGAAATCAATCACAGCCCATGCCTCCTCCTCCTCCTTCACCCCCTTCAGGCACTTCTGCCTCGTCTCCTCCACCTCCTCAAAGTAATTCCTCTTCTAGTGGATCTCCCTCATTTCCAACACCACCCTTTACTGCATTCCCACCAGAGGCGCCATCGAATCCTAGTCCAAGTGTACCGGGAAATGCCAACTCCACAGGTGGTGGGGGGATTCAAACAGGGGGCCTTGTGGCAATCGGTATTGTAGTAGGCTTCGTAGTGCTTAGTCTCCTTGGAATGACTGTGTGGTGTGCGAAGAAACAAAAGAAAAAGGCGGCTGGATACAATGGTGGCTATGTTATGCCTTCCCCACTTGGTTCTTCCCAGAAGTCAGATTCATTTTACATAAAGAGCAATTCTTCGGCTCCTTTAGTAAGAGGTGGCTCTAGCAGTGATTTTGTATATTCACCATCAGAGCCAGGTGGGTTAGGAAATTCGAGGTCGTGGTTCACATACAAAGAACTAATAGATGCCACAAATGGATTTTCAGCAAAGAATCTTTTGGGTGAAGGTGGATTTGGTTGTGTATACAAAGGATTTCTAGCAGATGGAAGAGAGGTGGCTGTAAAACAGCTCAAGATTGGTGGCGCTCAGGGAGAGCGTGAATTCAGAGCTGAAGTCGAGATTATTAGCCGTGTACACCATCGCCATTTGGTTTCACTAGTCGGGTACTGCATATCTGAGCATCAAAGATTGCTTGTCTACGATTATGTCCCAAACAATACCCTATATTACCATCTTCATGGGGAAGGTAGGCCAGTTATGGATTGGGCAACCCGGGTTAAGGTTGCTTCTGGTGCTGCTCGTGGAATGGCTTACCTGCATGAAGACTGCCATCCTCGGATTATTCACAGGGATATCAAGTCATCAAACATTCTTTTAGACAACAACTTTGAAGCTCGGGTTTCAGATTTTGGGCTCGCAAAGTTAGCTCTCGATGCTCACACACATGTAACCACACGTGTGATGGGAACCTTTGGATACATGGCTCCAGAATACGCATCAAGTGGCAAGTTGACTGAAAAGTCTGATGTGTACTCTTTCGGAGTTGTGCTTTTAGAACTAATTACTGGTCGCAAGCCTGTGGATGCATCTCAACCCTTGGGAGATGAGAGTCTGGTTGAATGGGCTCGACCATTGCTTAGTCATGCACTTGAGAATGAAGAATTTGAAGGTGTGGTAGATCCAAGGCTCGAAAAGAACTACATAGAAAGTGAGATGTTCCGGATGATTGAAGCAGCTGCAGCATGCGTGCGTCATTCTTCTGTGAAGAGACCTCGTATGGGACAGGTGGTCAGAGCTTTAGACTGTATTGGTGACTCTTCAGATCTAAACAACGGAATGAGACCGGGGCAAAGTGAAGTCTTCAATTCTGCACAACAATCTGCAGAAATCAGATTGTTTCGAAGGATGGCATTTGGTAGTCAAGACTACAGTACCGATTTTTTCAGTCAAGAGAGCAGGAGTTGA 2301 0.498 MASAAPSPTSSPSTVPPAASTTSPPPPSTTSPSPSDPSTTSPPPTPSQPPPPSISPPPPSDSSTPSPPPTVSQSNVTSDPPAPTIPSTPSSPPPQSPPPTVPAAPPPVLESPPAPPPPPLPTPAPLTSPPVLTPPQSPPRAPPPDVPSPPPPALSSQPPATGNSPPPVSHSPPPALSPPPPAVSPSPPPPRAVSPPSPPSSAVSPPPPANSAPPLPSNSPPPPSANPPKNSPPPPSPRLTPPAPSGSQPVSPPSPNSPPRSSPPPRNQSQPMPPPPPSPPSGTSASSPPPPQSNSSSSGSPSFPTPPFTAFPPEAPSNPSPSVPGNANSTGGGGIQTGGLVAIGIVVGFVVLSLLGMTVWCAKKQKKKAAGYNGGYVMPSPLGSSQKSDSFYIKSNSSAPLVRGGSSSDFVYSPSEPGGLGNSRSWFTYKELIDATNGFSAKNLLGEGGFGCVYKGFLADGREVAVKQLKIGGAQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLYYHLHGEGRPVMDWATRVKVASGAARGMAYLHEDCHPRIIHRDIKSSNILLDNNFEARVSDFGLAKLALDAHTHVTTRVMGTFGYMAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLSHALENEEFEGVVDPRLEKNYIESEMFRMIEAAAACVRHSSVKRPRMGQVVRALDCIGDSSDLNNGMRPGQSEVFNSAQQSAEIRLFRRMAFGSQDYSTDFFSQESRS* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01604 766 SMART serkin_6 439 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01604 766 FunFam Proline-rich receptor-like protein kinase PERK8 411 514 - -
Eupl04g01604 766 MobiDBLite consensus disorder prediction 305 320 - -
Eupl04g01604 766 FunFam proline-rich receptor-like protein kinase PERK8 515 727 - -
Eupl04g01604 766 Gene3D Transferase(Phosphotransferase) domain 1 515 735 - -
Eupl04g01604 766 MobiDBLite consensus disorder prediction 288 304 - -
Eupl04g01604 766 MobiDBLite consensus disorder prediction 82 287 - -
Eupl04g01604 766 ProSiteProfiles Protein kinase domain profile. 439 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01604 766 Gene3D Phosphorylase Kinase; domain 1 418 514 - -
Eupl04g01604 766 SUPERFAMILY Protein kinase-like (PK-like) 420 712 IPR011009 -
Eupl04g01604 766 MobiDBLite consensus disorder prediction 10 66 - -
Eupl04g01604 766 MobiDBLite consensus disorder prediction 67 81 - -
Eupl04g01604 766 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 349 748 IPR047117 -
Eupl04g01604 766 Pfam Protein tyrosine and serine/threonine kinase 442 711 IPR001245 GO:0004672|GO:0006468
Eupl04g01604 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 559 571 IPR008271 GO:0004672|GO:0006468
Eupl04g01604 766 MobiDBLite consensus disorder prediction 1 331 - -
Eupl04g01604 766 CDD STKc_IRAK 445 713 - -
Eupl04g01604 766 ProSitePatterns Protein kinases ATP-binding region signature. 445 467 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01604 Eupl-Chr4 28625379 28634015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01604 317 765 Trihelix Transcription Factor Family AT1G70460 56.639 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Eupl04g01604 PK_Tyr_Ser-Thr 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01604 - - nnu:104603097 753.436