Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01594 ATGAGACCTGAGGGGAACCCATTAGATCTCAACAACTTGCCTGAGGAGTACGGCAGAGACGGAAAACAGGTCTTGGAGGAGAGTTCCACCACTTGCACAGAAGCTTCAGATACCACTAGGTTTAGGAAAAAGAAAAGTGGCGCAAAAGATGGAAAAGATGAGTGTGGGAAGGTCTATGAGTGTAGGTTTTGCTCCCTGAAGTTCTGCAAATCTCAAGCTCTTGGTGGTCACATGAATCGTCATCGCCAAGAGAGGGAGACAGAGACACTGAACCGAGCGCGTCAGCTGGTCTTCTGTAACGAAAACATAGCCGCACAGGGGGGAACGCATCTAGGGTTGAGAGATCCAAACCTCGGCGATGCACGACCGATCTCATCTGGGAACTTTCACCAAAGTGGCAACATGGGAGACCCATCTCTACCCTTTCGACCCGTTTACTCAACAAGATTATTTTCTGGTTCTTCATCGGCAATCTTATCACCACCACCACCACCACCTCAACCATACCTGTACTCATCGTCTTCCCGCCTTGTCTCCTATCCCTCACATTATGCCCAACTCCACACAAATCTAAACTGTATGGGGGCGGCTGAATCCAGTTACACTTGCATTGGGGCTCCTCTCGGCCATGGCTTCCCGCCTAACGACAGAGTAGCCCGAGGGACAGATTTGTCGACATCCAGTGGAGGAGGAGACGGGTCACTGAGAAATCGGGATGGGCTGAATTGGGGTGGTAGCTACGTAGGGACACAGCAATGTTTGGATCCTTCTTCTATCGGTCGGTTTCAGGATAGATTTTAA 801 0.5031 MRPEGNPLDLNNLPEEYGRDGKQVLEESSTTCTEASDTTRFRKKKSGAKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNRARQLVFCNENIAAQGGTHLGLRDPNLGDARPISSGNFHQSGNMGDPSLPFRPVYSTRLFSGSSSAILSPPPPPPQPYLYSSSSRLVSYPSHYAQLHTNLNCMGAAESSYTCIGAPLGHGFPPNDRVARGTDLSTSSGGGDGSLRNRDGLNWGGSYVGTQQCLDPSSIGRFQDRF* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01594 266 MobiDBLite consensus disorder prediction 1 53 - -
Eupl04g01594 266 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Eupl04g01594 266 MobiDBLite consensus disorder prediction 37 53 - -
Eupl04g01594 266 Gene3D Classic Zinc Finger 34 108 - -
Eupl04g01594 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Eupl04g01594 266 FunFam Zinc finger protein STAMENLESS 1 33 107 - -
Eupl04g01594 266 SUPERFAMILY beta-beta-alpha zinc fingers 57 87 IPR036236 -
Eupl04g01594 266 MobiDBLite consensus disorder prediction 214 237 - -
Eupl04g01594 266 PANTHER ZINC FINGER PROTEIN JAGGED 32 183 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01594 Eupl-Chr4 28185866 28188015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01594 4 211 C2H2 Transcription Factor Family AT1G13400 42.152 1.86e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl04g01594 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01594 - - nnu:104602072 355.14