Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01585 ATGAGCCCAGACACCAAAGCTGCGAATGCCGTCGGTGGGAAGACGGCGAGGGCTTGCGATAGTTGCATGCTTAAACGCGCACGTTGGTATTGCGCTGCTGATGATGCTTTCCTATGTCAAGGGTGTGATGCTTCAGTCCATTCGGCGAACCCATTGGCAAGACGACATGAAAGGGTTCGACTAAAGACTGCATCACTCAAGCCCAACGATGATGCGTTGGTGGAGAATTCTCTACCAGCATGGCACCAGGGGTTCCGTCGCAAGGCACGAACCCCTCGACATACTAAGCCTATGTTGCTGCAGCAACCTAAGGCTGAGGAACAGATGTCAAACAATCTTCCTCTTGTGCCGGAGATCGGCAGTGATGAGACATCACCTGATGAAAATGAAGAACAGCTTCTCTACCGGGTTCCGATATTCGACCCTTTCGTCGCAGAATTGTGCACATCTGCAACACCAAGTGAAGCGGGGACTACCGCTCCTGATGCGACAACCACCACCACTATGGGATGCGAATCAAAAATTGTATCACCAGACTATGCTCATGATGCAACAGCAGATGTTGATAACTTACCTGGGTTTCTCCCATCTGATATGGATCTCGCAGAATTCGCCGCTGACGTCGAGACCTTACTCGGGACAGGACTCGACGAGGACTCATTTGGTATGGAAGGACTAGGACTGTTGGATTCTAAAGAGGAGAATACTATGGAGTGTTGTCTTGGGAGTGGAAGGGTGAAAGTGGAAGAGGAAGAAGAGGTGGAGGCTGCTGTGGCTTGTCATGTGGATCCGGAGTTCGACATGTCGAGAGAGACGTTGGACTTGAACTTCGATTACGATTCACCTACCACAGGCGAGGAGGAAGAGGAGCAGAAGGTGTTGGCCGGGACAGCAATGATGAACGGTGGAGATAAAATTGATGAGATGACAAGGAGGATACCATTGAAGCTTGACTACGAGGCAGTCATCGCTGCCTGGGCTAACCAGGGTTCGCCATGGACAACAGGCGCTCGGCCACAGTTCAACCCAGATGATTGTTGGCCCGACTGGTCGGGTACGTGCTCTACAGACTTTCATCACCCATATGGAGATCTGGGTGGTGTAGGGTCACACATGGTGTTCGGTGATGGAGGGAGGGAGGCTAGAGTGTCAAGATACAGAGAGAAGCGTAGAACACGGTTGTTCTCGAAGAAGATACGATACGAAGTTCGGAAACTGAACGCAGAAAAGAGACCCAGAATGAAAGGACGGTTCGTTAAGAGGGCATCCTTCGTGGGGCCGGCTTTTCCCTTTTGA 1296 0.5131 MSPDTKAANAVGGKTARACDSCMLKRARWYCAADDAFLCQGCDASVHSANPLARRHERVRLKTASLKPNDDALVENSLPAWHQGFRRKARTPRHTKPMLLQQPKAEEQMSNNLPLVPEIGSDETSPDENEEQLLYRVPIFDPFVAELCTSATPSEAGTTAPDATTTTTMGCESKIVSPDYAHDATADVDNLPGFLPSDMDLAEFAADVETLLGTGLDEDSFGMEGLGLLDSKEENTMECCLGSGRVKVEEEEEVEAAVACHVDPEFDMSRETLDLNFDYDSPTTGEEEEEQKVLAGTAMMNGGDKIDEMTRRIPLKLDYEAVIAAWANQGSPWTTGARPQFNPDDCWPDWSGTCSTDFHHPYGDLGGVGSHMVFGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFVGPAFPF* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01585 431 SMART bboxneu5 14 61 IPR000315 GO:0008270
Eupl04g01585 431 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 8 422 - -
Eupl04g01585 431 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Eupl04g01585 431 ProSiteProfiles CCT domain profile. 379 421 IPR010402 GO:0005515
Eupl04g01585 431 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Eupl04g01585 431 CDD Bbox1_BBX-like 18 61 - -
Eupl04g01585 431 Pfam CCT motif 379 421 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01585 Eupl-Chr4 27813327 27815495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01585 8 421 C2C2-CO-like Transcription Factor Family AT1G25440 47.332 3.69e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Eupl04g01585 zf-B_box 4.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01585 - - nnu:104602965 644.81