LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl04g01580	ATGACAGGACCTCAAAGGCATCTAATGAATCAAGATAAGGTTTATAGTAAAAAAGGGAAGAAGAAACTAATTTCTTCTGAAAGAGAGGAAGAAGAAGAGACGAAAAAGATGAGAAAAATCCGTGTAATCTGTTTCGATCCTGACGCGACTGATTCTTCATCGAGCGAAGAAGACGAAAGATGCCAAAAAAAGAAGCGTGTGATTCGGGAGATTCGTGTTCCCGTTTCTCCATCATCTGTTCTTGAAACTGAGAGCTCTTTCCAAGATAGCAACTATGGGGTGAAAAAACCTAATAAAGTTTGCAGAAATCCTAGTAGAAGGGTTTCACAGAAGACCCATAGATCTTCTTCTAAATACAGAGGCGTTCGACAGAGGAGATGGGGCAAATGGGCTGCTGAGATTCGAGACCCTCTTCGAGGTGTTCGAGTCTGGTTGGGTACTTTTGATACTGCTGAAGAAGCTTCGAAAGCTTACGAAACCGCATCGAAGAAGCTCGAAGCCGAATTGGAGAACATTACCCTCTCAGAGAAGAGCAACAACATCATGTCTTCGATGTCTGCAACAGTCTCCATGTCTGGTGACTCGGAAAGCCTCTTCTCTCATTCGTCCCCTTTGTCTGTCCTCGACGTCTCGACTTCAGCTCCTCCTCCGATACTTGCCTGTTCAGGCAATTCAACCAAGCAAGAAGGCGCACCCCATCAACAACAACAACAACAACAACAACAAGAACTTCCTGTTTTATCACTTTCACCCTCAATGGAGGGAGAGCTTGATCTTGGGTTCGGGCTCGATTCATTTCTTATGAACGATTTTGAACAGGTGTTCGACGATGTTGGCAACTTGGATGATCTTCCGATTTTTGGGTTCCTAGACAATGAAGCCAACGATCTTCCAAACTTCGATATGGATCTTTTCACTGATGAACTTGCTTGGATGGATGAATCTCTGAATATAGTCTCCCCATAA	966	0.4389	MTGPQRHLMNQDKVYSKKGKKKLISSEREEEEETKKMRKIRVICFDPDATDSSSSEEDERCQKKKRVIREIRVPVSPSSVLETESSFQDSNYGVKKPNKVCRNPSRRVSQKTHRSSSKYRGVRQRRWGKWAAEIRDPLRGVRVWLGTFDTAEEASKAYETASKKLEAELENITLSEKSNNIMSSMSATVSMSGDSESLFSHSSPLSVLDVSTSAPPPILACSGNSTKQEGAPHQQQQQQQQQELPVLSLSPSMEGELDLGFGLDSFLMNDFEQVFDDVGNLDDLPIFGFLDNEANDLPNFDMDLFTDELAWMDESLNIVSP*	322

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl04g01580	321	MobiDBLite	consensus disorder prediction	11	36	-	-
	Eupl04g01580	321	PIRSF	PTI6	14	221	IPR017392	GO:0003700
	Eupl04g01580	321	PIRSF	PTI6	236	313	IPR017392	GO:0003700
	Eupl04g01580	321	CDD	AP2	117	165	IPR001471	GO:0003700\|GO:0006355
	Eupl04g01580	321	Coils	Coil	148	171	-	-
	Eupl04g01580	321	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	37	235	-	-
	Eupl04g01580	321	MobiDBLite	consensus disorder prediction	1	36	-	-
	Eupl04g01580	321	PRINTS	Ethylene responsive element binding protein signature	141	157	IPR001471	GO:0003700\|GO:0006355
	Eupl04g01580	321	PRINTS	Ethylene responsive element binding protein signature	119	130	IPR001471	GO:0003700\|GO:0006355
	Eupl04g01580	321	MobiDBLite	consensus disorder prediction	217	244	-	-
	Eupl04g01580	321	ProSiteProfiles	AP2/ERF domain profile.	118	175	IPR001471	GO:0003700\|GO:0006355
	Eupl04g01580	321	MobiDBLite	consensus disorder prediction	79	93	-	-
	Eupl04g01580	321	Gene3D	AP2/ERF domain	117	172	IPR036955	GO:0003700\|GO:0006355
	Eupl04g01580	321	SMART	rav1_2	118	181	IPR001471	GO:0003700\|GO:0006355
	Eupl04g01580	321	MobiDBLite	consensus disorder prediction	79	119	-	-
	Eupl04g01580	321	SUPERFAMILY	DNA-binding domain	117	166	IPR016177	GO:0003677
	Eupl04g01580	321	Pfam	AP2 domain	117	167	IPR001471	GO:0003700\|GO:0006355
	Eupl04g01580	321	MobiDBLite	consensus disorder prediction	100	119	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl04g01580	Eupl-Chr4	27603170	27604135	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl04g01580	17	302	AP2-EREBP Transcription Factor Family	AT1G68550	39.203	1.30e-36	132

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Eupl04g01580		AP2	1.4e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl04g01580	-		-	nnu:104602974	301.597