Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01573 ATGAAGGTTTTCGTGAAGACTCTGAAGGGTACTCACTTCGAGATCGAAGTGAAACCAGAAGATACGGTTTCTGATGTGAAGAAAAACATAGAAACAGTTCAAGGCTCAGATGTTTACCCTGCCACACAACAAATGCTCATCCATCAGGGGAAAGTTCTTAAAGATGCCACAACACTGGATGAAAACAAAGTTTCTGAAAATAGTTTTCTTGTCATTATGTTGACCAAGAATAAGGGCTCATCTAGTGGAGCTTCAACCACAACGGCTGCCCCCACAAGTCAAACTCCACCCACAAGTTCACCGCCTCCTACTTCAATTCCGGCATCAACAACATCTCAAGCTCCTGCAGCAACCTTGGCTCCGCCACCATCAGTTCCTGCTCCTGCTGTTCCAGCTCCTGCTGCTGCTCCTGCTCCTGCTGCTGCCCCTGCTCCTGCTGCTGCCCCTGCTCCTGCTGCTTCTCCTCCTCCTACTGCTGCTGCTGCTGTTCCTGCTATCCCAGAATCAGATGTCTATGGTCAGGCAGCATCAAATCTTGTTGCAGGAAATAACTTTGAGGACACCATTCAGCAAATTCTTGATATGGGGGGAGGGAATTGGGACAGGGATACCGTAGTCCGTGCTCTACGGGCTGCTTTCAATAACCCAGAGAGAGCTGTTGAATATTTATATTCTGGTATCCCTGAGCAAGCAGAAGCTCCACCTGTGGCCCGACCACCTACGAGTGGACAAGCTGCAAATCCACCTGCCCAGGCTCCACTACCGGCACAGCCAGCAGTTCCTTCCAGTGGACCTAATGCAAATCCTTTAGATCTTTTTCCACAGGGTCTTCCCAACATGGGTTCGAATGCTGGTGCAGGCACCTTGGATTTTCTACGCAGCAGTCAACAGTTCCAAGCTTTGCGAGCTATGGTGCAGGCGAACCCCCAAATCTTGCAGCCAATGCTTCAAGAGCTTGGGAAGCAAAATCCACACCTAATGAGGCTCATTCAAGAGCATCAGGCTGATTTCCTTCGGCTGATCAATGAACCCGTTGAAGGAGAAGAGGGGAACATACTGGGGCAGCTGGCCTCAGCAATGCCACAGGCAGTGACTGTCACACCTGAGGAACGCGAAGCCATTGAACGCCTTGAGGCGATGGGCTTTGATCGGGCAATTGTACTGGAGGTGTTCTTTGCCTGCAACAAGAATGAGGAGCTTGCCGCGAACTATCTTCTAGATCACATCCATGAATTTGAGGAGTGA 1245 0.502 MKVFVKTLKGTHFEIEVKPEDTVSDVKKNIETVQGSDVYPATQQMLIHQGKVLKDATTLDENKVSENSFLVIMLTKNKGSSSGASTTTAAPTSQTPPTSSPPPTSIPASTTSQAPAATLAPPPSVPAPAVPAPAAAPAPAAAPAPAAAPAPAASPPPTAAAAVPAIPESDVYGQAASNLVAGNNFEDTIQQILDMGGGNWDRDTVVRALRAAFNNPERAVEYLYSGIPEQAEAPPVARPPTSGQAANPPAQAPLPAQPAVPSSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRSSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGEEGNILGQLASAMPQAVTVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHIHEFEE* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01573 414 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Eupl04g01573 414 CDD UBA1_Rad23_plant 179 228 - -
Eupl04g01573 414 CDD UBA2_RAD23_plant 366 408 - -
Eupl04g01573 414 SMART CBM 287 330 IPR006636 -
Eupl04g01573 414 SMART ubq_7 1 75 IPR000626 GO:0005515
Eupl04g01573 414 MobiDBLite consensus disorder prediction 231 268 - -
Eupl04g01573 414 MobiDBLite consensus disorder prediction 119 161 - -
Eupl04g01573 414 Pfam UBA/TS-N domain 370 405 IPR015940 -
Eupl04g01573 414 Pfam UBA/TS-N domain 186 223 IPR015940 -
Eupl04g01573 414 MobiDBLite consensus disorder prediction 78 161 - -
Eupl04g01573 414 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 403 - -
Eupl04g01573 414 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Eupl04g01573 414 FunFam UV excision repair protein RAD23 B 280 345 - -
Eupl04g01573 414 NCBIfam UV excision repair protein Rad23 122 413 IPR004806 GO:0006289
Eupl04g01573 414 CDD Ubl_Rad23 1 74 - -
Eupl04g01573 414 Gene3D - 1 80 - -
Eupl04g01573 414 MobiDBLite consensus disorder prediction 78 94 - -
Eupl04g01573 414 FunFam UV excision repair protein RAD23 1 80 - -
Eupl04g01573 414 SUPERFAMILY UBA-like 351 412 IPR009060 GO:0005515
Eupl04g01573 414 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 183 226 IPR015940 -
Eupl04g01573 414 PRINTS DNA repair protein Rad23 signature 381 395 IPR004806 GO:0006289
Eupl04g01573 414 PRINTS DNA repair protein Rad23 signature 315 337 IPR004806 GO:0006289
Eupl04g01573 414 PRINTS DNA repair protein Rad23 signature 364 380 IPR004806 GO:0006289
Eupl04g01573 414 PRINTS DNA repair protein Rad23 signature 396 411 IPR004806 GO:0006289
Eupl04g01573 414 FunFam UV excision repair protein RAD23 homolog 361 409 - -
Eupl04g01573 414 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Eupl04g01573 414 FunFam UV excision repair protein RAD23 homolog 178 228 - -
Eupl04g01573 414 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 367 408 IPR015940 -
Eupl04g01573 414 Gene3D - 362 409 - -
Eupl04g01573 414 Pfam XPC-binding domain 289 344 IPR015360 GO:0003684|GO:0006289|GO:0043161
Eupl04g01573 414 Gene3D - 280 345 IPR036353 GO:0003684|GO:0006289|GO:0043161
Eupl04g01573 414 SUPERFAMILY UBA-like 182 237 IPR009060 GO:0005515
Eupl04g01573 414 Gene3D - 178 228 - -
Eupl04g01573 414 SMART uba_6 185 225 IPR015940 -
Eupl04g01573 414 SMART uba_6 370 407 IPR015940 -
Eupl04g01573 414 SUPERFAMILY XPC-binding domain 285 351 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01573 Eupl-Chr4 27315962 27345675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01573 1 79 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.975 3.25e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01573 K10839 - qsa:O6P43_032759 534.258