Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01527 ATGCACACCCCTTCGCTTAACCACATCTCCTCTAGTGAGAGCGCTTGTTTAGAAGTTGATGAAGATGATATACTGCTCACTCTTCGCCCACCAGGACAAGACAACTCCTCCAAACGCCGTTTCTGTCATCACTCCTCCGACCATGTCGGAGATTGTCGACATTCTACTAGCAAAGATAGTGTAACCGTCGCTCTTCATATCGGACCCTCATCTGCTGGAGCTAGCACAAGCAGTATTACTACTACTAACAATGATGTCCCAACTGATGAACAATATTGGATTCCATCACCTGCTCAAATCCTTGTTGGCGCAACTCAATTTTCTTGCATTGTGTGCAACAAGACCTTCAACCGATACAACAATATGCAGATGCATATGTGGGGGCACGGATCGCAGTATCGAAAGGGTCCAGAGTCGCTAAGGGGGACGAAACCAGCGTCATCGATGTTGAGATTGCCTTGTTATTGCTGTGCTCAGGGTTGTAAGAACAACATTGAACACCCACAGTCGAAACCATTAAAGGATTTCAGGACACTTCAAACACATTACAAGCGAAAACATGGAGTGAAACCGTTTGGGTGTCGTAAATGTGGGAAGCCTTTTGCAGTTAAGGGTGATTGGCGTACCCATGAGAAGAACTGTGGGAAGCTCTGGTTTTGTATATGTGGTTCTGATTTTAAGCACAAGAGGTCCCTCAAGGACCATATACGTTCATTCGGAGATGGTCACGCTCCGCATGGTGTAGATTTACGTGAGAATGAAGAAGAAGATGATGAAAATGAGGATGAATACGGAAATGGAGGTCATGGTTCTGTGTACTGTTAG 825 0.4545 MHTPSLNHISSSESACLEVDEDDILLTLRPPGQDNSSKRRFCHHSSDHVGDCRHSTSKDSVTVALHIGPSSAGASTSSITTTNNDVPTDEQYWIPSPAQILVGATQFSCIVCNKTFNRYNNMQMHMWGHGSQYRKGPESLRGTKPASSMLRLPCYCCAQGCKNNIEHPQSKPLKDFRTLQTHYKRKHGVKPFGCRKCGKPFAVKGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHIRSFGDGHAPHGVDLRENEEEDDENEDEYGNGGHGSVYC* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01527 274 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Eupl04g01527 274 SMART c2h2final6 192 212 IPR013087 -
Eupl04g01527 274 SMART c2h2final6 107 129 IPR013087 -
Eupl04g01527 274 SMART c2h2final6 155 187 IPR013087 -
Eupl04g01527 274 SUPERFAMILY beta-beta-alpha zinc fingers 173 212 IPR036236 -
Eupl04g01527 274 Gene3D Classic Zinc Finger 151 241 - -
Eupl04g01527 274 FunFam Zinc finger protein WIP2 161 243 - -
Eupl04g01527 274 MobiDBLite consensus disorder prediction 243 274 - -
Eupl04g01527 274 PANTHER ZINC FINGER PROTEIN WIP2 24 260 IPR043584 GO:0003700|GO:0010468
Eupl04g01527 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Eupl04g01527 274 SUPERFAMILY beta-beta-alpha zinc fingers 104 128 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01527 Eupl-Chr4 25672972 25673918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01527 20 251 C2H2 Transcription Factor Family AT1G13290 70.464 7.95e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl04g01527 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01527 - - vri:117924184 427.557