Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01524 ATGGATAGTAGTTGCATAGATGAGAGTTCTAGTGATTCGATTTCGGTTTCGCCGGTGACAGTATCGGCTTCACCGGAGAAGTTATGCCGAGTTGGGAGTGGGGCTAGTGTGGTGCTAGACTCGGAGAATGGCGTCGAGGCCGAGTCACGAAAACTCCCCTCATCTCAATACAAGGGAGTAGTCCCCCAGCCCAACGGGCGTTGGGGGGCACAGATATACGAGAAGCACCAAAGGGTCTGGTTGGGGACATTCAATGAAGAGGAAGAAGCTGCTAAAGCCTATGACATAGCAGCACAAAGGTTCCGCGGCCGCGACGCTGTCACCAACTTCAAGCCTTTATCGGAGTTCGATGAATTCGACATCGAGGCAATTTTCTTGAATTCTCATTCCAAGGCTGAGATCGTCGACATGCTTCGCAAACACACTTATAATGACGAGCTCGAGCAAAGTAAACGCAATTATGGTAACGGTGATGGTAAAAGAAATCGAGGGGGACCATTTGTGGCTTCAACCGGGTCCGACCCGGTATTGAAGGCACGCGAGCATCTCTTCGACAAGGCGGTAACACCGAGCGATGTCGGTAAGCTAAACCGATTAGTTATACCGAAACAACATGCCGAGAAACACTTTCCTTTGCCAATTGGGAGCATTTCCAAAGGTCTGTTATTGAATTTTGAGGATAATGGAGGGAAGGTATGGAGATTCAGATACTCCTATTGGAACAGTAGTCAGAGTTATGTGCTCACAAAAGGGTGGAGCCGGTTTGTGAAGGAGAAGTGCTTGAAGGCCGGAGACATTGTTAGTTTTCAGCGATCGACGGGGCCGGATAATCAGCTTTACATCGATTGGAAGCCGCGAAACGGGTCGGGTTTTTTAGCGTCGTCGACACACCCGGTTTACCCAATGAACCCGGTTCAGCCGGTTCAGGTGGTTAGACTATTTGGGGTCAACATTTTGAAAGTACCAGTCATGAACAGCAGTGTTATGGATAGTAGTTGGAATGGGAAGAGAATGAGGGAAGTGGAGTTATTATCATTAGAGTGCTGTAAGAAACAACGCGTTGTAGGAGCTTTGTAA 1077 0.4847 MDSSCIDESSSDSISVSPVTVSASPEKLCRVGSGASVVLDSENGVEAESRKLPSSQYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFKPLSEFDEFDIEAIFLNSHSKAEIVDMLRKHTYNDELEQSKRNYGNGDGKRNRGGPFVASTGSDPVLKAREHLFDKAVTPSDVGKLNRLVIPKQHAEKHFPLPIGSISKGLLLNFEDNGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKCLKAGDIVSFQRSTGPDNQLYIDWKPRNGSGFLASSTHPVYPMNPVQPVQVVRLFGVNILKVPVMNSSVMDSSWNGKRMREVELLSLECCKKQRVVGAL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01524 358 SMART rav1_2 56 117 IPR001471 GO:0003700|GO:0006355
Eupl04g01524 358 MobiDBLite consensus disorder prediction 1 22 - -
Eupl04g01524 358 CDD B3_DNA 182 272 IPR003340 GO:0003677
Eupl04g01524 358 SUPERFAMILY DNA-binding domain 55 111 IPR016177 GO:0003677
Eupl04g01524 358 SUPERFAMILY DNA-binding pseudobarrel domain 181 282 IPR015300 -
Eupl04g01524 358 MobiDBLite consensus disorder prediction 149 171 - -
Eupl04g01524 358 CDD AP2 55 110 IPR001471 GO:0003700|GO:0006355
Eupl04g01524 358 Gene3D AP2/ERF domain 55 112 IPR036955 GO:0003700|GO:0006355
Eupl04g01524 358 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Eupl04g01524 358 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Eupl04g01524 358 ProSiteProfiles AP2/ERF domain profile. 56 111 IPR001471 GO:0003700|GO:0006355
Eupl04g01524 358 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 51 330 IPR044800 GO:0003700
Eupl04g01524 358 ProSiteProfiles B3 DNA-binding domain profile. 184 287 IPR003340 GO:0003677
Eupl04g01524 358 Pfam AP2 domain 56 103 IPR001471 GO:0003700|GO:0006355
Eupl04g01524 358 MobiDBLite consensus disorder prediction 1 23 - -
Eupl04g01524 358 SMART B3_2 184 287 IPR003340 GO:0003677
Eupl04g01524 358 Gene3D - 173 294 IPR015300 -
Eupl04g01524 358 FunFam AP2 domain-containing protein RAP2.8 55 112 - -
Eupl04g01524 358 Pfam B3 DNA binding domain 184 284 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01524 Eupl-Chr4 25593392 25595109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01524 1 358 B3 DNA Binding Superfamily AT1G25560 62.304 2.57e-154 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Eupl04g01524 B3 1.4e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01524 K09287 - nnu:104603036 555.058