Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01521 ATGAAATTTGAAGGAAATCTATGTGGGAGAGGCAGAGTCATCAGTCTCCTGAAGATAGAACGTACGGAAATGGCGACAGTTGCAGCAGTTGGAGCAGCGGTTGGGCTCCGCCTGAAGTCCAAAACGTCAACCGTGTCATCTCCATTTCTAGGAAGAAAGCTCGAAATCAAATACTCATCTGAATCAAAACCAGGAAAAACCACCTCAAATTCGAAGTTGTTAGTGGTATGTTCTGGAGGTGAACTGCTCAACCTTGTTCAAGATCTCTTCGTCGGCGTCGGCGTTGGGCTTCCCTGCACAGTCATGGAGTGCGGAGACATCATCTACAGAAGTACTCTCCCTCGATCCAACGGACTCACCCTTACGGCCCCTGGTGTCGTTTTAGCTCTGGGTGCCCTCTCTTACCTCTGGGCTACCCCTGGGGTGGCTCCTGGTTTCTGGGACATGTTTGTTCTTGCTTTTTTTGAGCGATTCTTCAGACCTACTTATAGGAAGGATGATTTTGTGTTGGGGAAGAAGTTGGGTGAGGGAGCTTTTGGGGTGGTTTATAGAGTTTCACTGTCGAAGAAACCTGCTTCCAAGGAAGGGGATTTAGTCTTGAAAAAGGCTACTGAATATGGTGCGGTCGAGATTTGGATGAACGAGCGCGTAAGACGGGCTTGCGCAAATAGCTGTGCCGATTTCGTGTACGGCTTTCTCGAGAGCTCTTCAAAGAAAGGAGGTGAATATTGGCTCATTTGGCGATTCGAAGGAAAAGCGACACTGACAGATCTCATGCTGAGTAAAGATTTCCCATACAATGTGGAAACAATGATTCTTGGCAAGGTCCAAAACTTGCCAAAGGGATTGGAGAGGGAGAATAGGATCATTCAAACCATCATGAGGCAGCTTTTATTTGCTTTGGATGGGCTTCATTCAACAGGGATTGTTCATAGAGACATTAAGCCACAGAATATTATTTTCTCTGAAGGATCTCGTACATTCAAGATCATTGACCTCGGTGCTGCAGCGGATTTGCGAGTTGGAATCAATTATATTCCAAAGGAGTTTCTGTTGGATCCAAGGTATGCAGCACCCGAGCAATACATCATGAGCACACAGACACCATCTGCACCCTCGGCTCCAGTGGCAGCTGCACTGTCCCCAGTCCTGTGGCAGATGAATTTGCCCGATAGATTTGATATCTACAGCATGGGGCTCATATTCTTGCAAATGGCATTTCCATCATTACGCACCGACAGTAGCCTCATACAATTCAACCGTCAGCTGAAGAGGTGTGAATATGACTTAGTTGCATGGAGGAACAGCGTAGAGCCCCGTGCAAGCCCCGAACTCCGGAAGGGATTTGAGTTGTTGGATTTAGATGGTGGTACAGGGTGGGAGCTTCTCACGTCGATGGTTCGCTACAGAGCACGGAAAAGGACCAGCGCCAAAGCTGCTTTAGCTCATCCGTACTTTGACAGGGAAGGTCTATTAGCTCTATCTTTCATGCAGAACTTGAGGCTGCAATTGTTTCGTGCTACTCAGCAGGACTATGGGGAAGCTGCCAAGTGGGTGATCGGGCATATGGCAAAGTCTGGGACAAAGCAGGATGGGGGATTCACAGAAGCCCAGCTTCAAGAGCTGAGAGAAATAGAGCCAAAGAAGGCGGCGAGCGTGCAGAGGAATGCTCTCGCATCCGCTCTTCGACTCCAGAGGAAGATCTTAAGAACACTGAACGAGAGCATGGACGAGCTCAACCAAAGCAGGAAGAGCCTATGGTGGAGCAGGTGGATCCCCAGAGAGGAATGA 1791 0.4858 MKFEGNLCGRGRVISLLKIERTEMATVAAVGAAVGLRLKSKTSTVSSPFLGRKLEIKYSSESKPGKTTSNSKLLVVCSGGELLNLVQDLFVGVGVGLPCTVMECGDIIYRSTLPRSNGLTLTAPGVVLALGALSYLWATPGVAPGFWDMFVLAFFERFFRPTYRKDDFVLGKKLGEGAFGVVYRVSLSKKPASKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLESSSKKGGEYWLIWRFEGKATLTDLMLSKDFPYNVETMILGKVQNLPKGLERENRIIQTIMRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVAAALSPVLWQMNLPDRFDIYSMGLIFLQMAFPSLRTDSSLIQFNRQLKRCEYDLVAWRNSVEPRASPELRKGFELLDLDGGTGWELLTSMVRYRARKRTSAKAALAHPYFDREGLLALSFMQNLRLQLFRATQQDYGEAAKWVIGHMAKSGTKQDGGFTEAQLQELREIEPKKAASVQRNALASALRLQRKILRTLNESMDELNQSRKSLWWSRWIPREE* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01521 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Eupl04g01521 596 Pfam Protein kinase domain 170 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01521 596 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 80 571 - -
Eupl04g01521 596 SMART serkin_6 168 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01521 596 Gene3D Transferase(Phosphotransferase) domain 1 275 490 - -
Eupl04g01521 596 SUPERFAMILY Protein kinase-like (PK-like) 149 488 IPR011009 -
Eupl04g01521 596 CDD STKc_SNT7_plant 172 486 - -
Eupl04g01521 596 ProSiteProfiles Protein kinase domain profile. 168 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01521 596 Gene3D Phosphorylase Kinase; domain 1 157 248 - -
Eupl04g01521 596 FunFam Serine/threonine-protein kinase STN7, chloroplastic 277 491 - -
Eupl04g01521 596 ProSitePatterns Protein kinases ATP-binding region signature. 174 201 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01521 Eupl-Chr4 25509721 25516312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01521 286 487 Core Cell Cycle Gene Families AT2G38620 30.986 1.12e-16 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Eupl04g01521 Pkinase 1.2e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01521 - - ming:122079933 972.615