Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01515 ATGGCAGGACCATCATGGTTGGTGGACAGCAAACGAATTGCAACAAAAATCAAAAGTGCATCTGAAACATGCGAATCCAAAAGAGTCAGATGGAAGAGCAACCCAACAAGAGCCTGTCCCCAGTGCAACCATATTATTGACAACAGTGATGTCACCCAAGAGTGGCCAGGTTTACCCAGAGGTGTTAAATTTGATCCATCTGATCAAGAGATTATTTGGCATTTACTTGCAAAAGTTGGTGTTGGGAACGTGAACCCTCATCCTTTTATTAATGAGTTTATTCCTACTGTTGATGAAGATGATGGAATCTGTTATACCCATCCTCAAAATCTACCAGAAGTTAAGCAAGATGGAAGAGTGTCCCATTTCTTTCATAGAGCAATCAAGGCATATAGCACTGGGACTCGGAAGCGTCGGAAGATACAAGGTGATGACCTGGGTGATGTCCGTTGGCATAAGACTGGAAGGACCAAACCTGTTATCTTGGATGGGATACAAAAAGGAATGAAGAAAATTATGGTTCTGTACCTGAGCACGGCAAAGGGTGGGAAACCTGAGAAAACTAATTGGGTGATGCATCAGTATCACCTTGGCACAGGAGAGGATGAGAAGAATGGAGAGTTTGTTGTTTCCAAAGTATTTTATCAACAACAGGCAAAGCCAGGTGACAAAATTGAGCAAGATCTTCCTCTTGACATCACCGAAGCCATTATTACAAAAGTAGACCCAGTCACTCCAAAGTCTGTGATTCCTGAACCCCCTCGTACGGAAAGGCTTCAATCTGATATTGACCCTCGACAAGAACCTGCATTTAATTTCATGGAAACCACTGCCCAGAATCTTGAGGTAAGAGATTTAGAAGATGGGGTGCCGGCTGAATGGGGGGTCCTTAATGATCATGATAATCACACAGGAGAAGACCACGATAACCACACGGTGGAAGATTCGAAATGGTGGGAAGGTGAATCACAATTATTGTTAGATTCTCAGCAACTAGTGGAAGGCTTATCTCTGTGTGATGAGTTCCTTCATAGTCAGTCTTCAAGTGGAGATGGGGATGACAAAGAAAGAAAGGTCAAACCCTGTCTATCTGATTATGCTCGCATTGGGGCTGAAGATCTTAAAAAGGACTTAGAGGAGTGGCAAAATTTGAGCCATCTTGATCCTTTAAATAATGGCAATGGAAGAAAGGTCAAACCCTGTCTATCTGATTGTGCTCGCATAGGGTCCGAAGATCAGGAGTTCCAAAATTTTGGCCTTCTTGATCCTTCAACTGTCGACCTTGATACACCTCCGGATTTTCGACTGAGCCAGCTTGTATGTTGTCGGATCTTCTCCACCCATTCATTTTCTTGTCCTTATGTTGGAAGTTGTCAGATGGTACTACTTCTCATTGACCTTTCGTTAATTATAATTAATTTTTAA 1425 0.426 MAGPSWLVDSKRIATKIKSASETCESKRVRWKSNPTRACPQCNHIIDNSDVTQEWPGLPRGVKFDPSDQEIIWHLLAKVGVGNVNPHPFINEFIPTVDEDDGICYTHPQNLPEVKQDGRVSHFFHRAIKAYSTGTRKRRKIQGDDLGDVRWHKTGRTKPVILDGIQKGMKKIMVLYLSTAKGGKPEKTNWVMHQYHLGTGEDEKNGEFVVSKVFYQQQAKPGDKIEQDLPLDITEAIITKVDPVTPKSVIPEPPRTERLQSDIDPRQEPAFNFMETTAQNLEVRDLEDGVPAEWGVLNDHDNHTGEDHDNHTVEDSKWWEGESQLLLDSQQLVEGLSLCDEFLHSQSSSGDGDDKERKVKPCLSDYARIGAEDLKKDLEEWQNLSHLDPLNNGNGRKVKPCLSDCARIGSEDQEFQNFGLLDPSTVDLDTPPDFRLSQLVCCRIFSTHSFSCPYVGSCQMVLLLIDLSLIIINF* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01515 474 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Eupl04g01515 474 FunFam NAC domain-containing protein 8 67 220 - -
Eupl04g01515 474 Gene3D NAC domain 67 220 IPR036093 GO:0003677|GO:0006355
Eupl04g01515 474 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Eupl04g01515 474 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 382 IPR044799 GO:0003700
Eupl04g01515 474 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01515 Eupl-Chr4 25352404 25360156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01515 14 226 NAC Transcription Factor Family AT1G28470 51.351 8.94e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl04g01515 NAM 8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01515 - - psom:113303037 618.616