Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01508 ATGTGTGGGAAGAAAGAAGAAGATCAAGGAGAGTGTTCTCAGGGTATTCAACACATGCAAGGGTACCAAGAACAATTATTTCTTCAACAGCATCAACAGTTTCAACAACAACAACAACAACAACAATACAGTGATGGTTATGGAGGAGGGGGAGGAGGGAGAGGAGGATTAATCTTCCCTGAACCCTCTCCGATCCTACCATGGTCTCTACCTCCGGTTCACTCTTTTAACCCAGTTCACTTCTCAACAAACCAGGTCCGAGACCATGATCCATTTCTTGTTCCTCCTCCTCCTTCATCATATGGAGGTTTATTCAACCGAAGAGCTTCTGCTCTACAGTTTGCTTATGAAGGTCCATCATCAGATCATCACCTTCGGATCATATCAGACCCACTTGTACCAACGGTTCAACCTGGTTCCTCTCCTTTTGGGCTTCAAGCTGAGTTGGGTAAGATGACTGCTCAAGAGATCATGGATGCTAAAGCTCTTGCTGCCTCTAAGAGCCACAGCGAGGCTGAGAGGAGACGAAGAGAGAGAATCAATAAACATCTTGCCAACTTGCGCAGCTTGCTACCCAGCACCACCAAAACGGATAAAGCTTCATTGCTCGCAGAAGTGATCCAACATGTCAAAGAGCTTAAACGCCAGACTTCCCAGATCGCGGAAGCGAGCCCAGTGCCGACTGAGATGGACGAACTCACAGTAGATGCAACAGATGAGGACGGGAAGTTTATAATTAAAGCTTCCTTATGTTGTGAAGACAGGTCTGATCTCTTGCCAGATCTCATTAAGACATTGAAAGCACTCCGATTACGAACCCTGAAAGCTGAGATAACGACGCTTGGAGGGCGCGTGAAGAATGTCTTGTTCATCACGGGAGAAGAAGAATCGAAGAGCAGTACTGACCAACAACAACAACACTCTATCAGTTCGATTCAAGAAGCACTGAAAGCTGTCATGGAGAGAACAGGTGGTGATGAGTCATCTTCAGGGAGTATGAAGAGACAAAGAACTAACATGAACATGCTTGAACACAGATCTCTTTAA 1047 0.4575 MCGKKEEDQGECSQGIQHMQGYQEQLFLQQHQQFQQQQQQQQYSDGYGGGGGGRGGLIFPEPSPILPWSLPPVHSFNPVHFSTNQVRDHDPFLVPPPPSSYGGLFNRRASALQFAYEGPSSDHHLRIISDPLVPTVQPGSSPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINKHLANLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSQIAEASPVPTEMDELTVDATDEDGKFIIKASLCCEDRSDLLPDLIKTLKALRLRTLKAEITTLGGRVKNVLFITGEEESKSSTDQQQQHSISSIQEALKAVMERTGGDESSSGSMKRQRTNMNMLEHRSL* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01508 348 FunFam transcription factor bHLH30 159 222 - -
Eupl04g01508 348 MobiDBLite consensus disorder prediction 295 313 - -
Eupl04g01508 348 CDD bHLH_AtAIG1_like 159 237 - -
Eupl04g01508 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 220 IPR036638 GO:0046983
Eupl04g01508 348 Gene3D - 158 224 IPR036638 GO:0046983
Eupl04g01508 348 MobiDBLite consensus disorder prediction 295 348 - -
Eupl04g01508 348 MobiDBLite consensus disorder prediction 30 56 - -
Eupl04g01508 348 PANTHER TRANSCRIPTION FACTOR BHLH30 29 339 IPR045847 GO:0003700|GO:0006355
Eupl04g01508 348 SMART finulus 170 219 IPR011598 GO:0046983
Eupl04g01508 348 MobiDBLite consensus disorder prediction 30 46 - -
Eupl04g01508 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Eupl04g01508 348 Pfam Helix-loop-helix DNA-binding domain 167 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01508 Eupl-Chr4 24955719 24957738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01508 1 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.704 5.14e-109 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl04g01508 HLH 5.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01508 - - tcc:18610548 495.738