Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01482 ATGAGGAAGAGAAAGAGAGAGAAAAAGAGAACGCTCGCAAACTCAGAGACTGTGGACAGAAGTCACAGAACCGATAATGGAGTCGAAGTCTCAGAAGAAGCTGAAGCAGAGGAGATTGCAGAGAAAAGAAGCCAAACCTCGAATGAGGATGGAGAAGAAGACGGAGATGGTGAAGAGGAGAAAGCTATCTACGAGACGACGACGAAGAAGAAGCAGAGGGGATCAGGAATCATGAGCACGGAGTCTTTCTCTCTTTTGAGCATCTCTGAACCCACAATGAATGCCATTAAAGACTTGGGCTTCGAGAACATGACTCAGATTCAAGCTAGAGCCATCCCACCACTTTTGGAAGGCAAGGATGTTCTTGGAGCTGCAAGGACAGGTTCTGGGAAGACCCTTGCTTTCTTGGTACCAGCTATTGAATTGTTGCATCACATCTGTTTTAATCCTCGTAACGGAACGGGTGTTGTTGTCATTTGCCCAACTAGGGAGCTTGCCATACAGACACATGCTGTAGCCAAGGACCTTCTCAAGTACCATACACAGACTCTTGGCTTGGTTATTGGTGGTGCAGCTCGAAGGGGGGAAGCAGAACGCCTCGTGAAAGGGGTAAACCTATTAGTAGGGACCCCTGGTAGACTTCTTGACCATCTTCAAAATACTAAGGGGTTCATATATAAAAATCTGAAGTGCCTCATGATTGATGAAGCTGACCGGATTTTGGAAGCAAACTTTGAGGATGAAATGAAGCAAATTATTAGGCTTCTACCAAAGGAGAGGCAGACAGCTCTTTTTTCTGCTACCCAGACGAAAAAGGTTGAAGATCTTGCACGCTTGTCATTTCAGACAACTCCAGTATATATTGATGTGGATGATGGGAGGTCAAAGGTTACTGTAGAAGGGTTGCAGCAAGGCTACTGTGTTGTGCCAAGTGCCGATAGATTTATTCTTCTTTATTCATTCTTGAAGAGGAATCTGTCAAAGAAAGTGATGGTTTTCTTCTCTTCGTGTAACTCGGTCAAATATCACTCTGAGCTTCTCCAATACATTAAGGTCGATTGCTTTGATATCCATGGAAAACAAAAACAGCAGAAACGTACCTCCACCTTTTTTGACTTCATCAAGGCAGAGAAAGGCATCTTATTATGTACTGATGTTGCTGCTCGTGGGCTTGATATCCCTGCTGTGGACTGGATTGTGCAGTATGATCCTCCAGATGAGCCCAAGGAGTACATTCATCGTGTTGGCCGAACAGCTCGTGGCGAAGGTGGCAAAGGACATGCACTGCTCTTCTTGATACCAGAAGAGTTGCAATTTCTCCGTTATCTTAAGGCAGCCAAAGTGCCCGTTAAAGAATACGAGTTCGATCAAAGGAAGCTGGCGCACGTGCAGCCCCACCTGGAGAAACTGGTAGCAAACAACTATTACCTGAATAATTCAGCTAAGGAAGCTTATAGGTCCTATATATTAGCATACAATTCACATTCAATGAAGGACATCTTCAACGTTCATCGCTTAAATCTTCAGGCGGTTGCTGCTTCATTCTGCTTTTCTAGTCCTCCAAAGATAAATCTGACCTTAGACAGCAGCGCAGCTAAATTTAGGAAGAAAGCGCGCAAAGTTGAAGGAAGCCGTCATGGGATCAGTGAAAGCAACCCCTATGGGAAACAGAGAGGTGGAGATGATAATCGACAATTCGTAAGGTATTAG 1710 0.4468 MRKRKREKKRTLANSETVDRSHRTDNGVEVSEEAEAEEIAEKRSQTSNEDGEEDGDGEEEKAIYETTTKKKQRGSGIMSTESFSLLSISEPTMNAIKDLGFENMTQIQARAIPPLLEGKDVLGAARTGSGKTLAFLVPAIELLHHICFNPRNGTGVVVICPTRELAIQTHAVAKDLLKYHTQTLGLVIGGAARRGEAERLVKGVNLLVGTPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEDEMKQIIRLLPKERQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRSKVTVEGLQQGYCVVPSADRFILLYSFLKRNLSKKVMVFFSSCNSVKYHSELLQYIKVDCFDIHGKQKQQKRTSTFFDFIKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGHALLFLIPEELQFLRYLKAAKVPVKEYEFDQRKLAHVQPHLEKLVANNYYLNNSAKEAYRSYILAYNSHSMKDIFNVHRLNLQAVAASFCFSSPPKINLTLDSSAAKFRKKARKVEGSRHGISESNPYGKQRGGDDNRQFVRY* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01482 569 CDD DEADc_DDX18 92 289 IPR044773 GO:0003724|GO:0005524
Eupl04g01482 569 PANTHER RNA HELICASE 42 472 - -
Eupl04g01482 569 Gene3D - 300 538 IPR027417 -
Eupl04g01482 569 MobiDBLite consensus disorder prediction 1 61 - -
Eupl04g01482 569 Gene3D - 24 291 IPR027417 -
Eupl04g01482 569 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 443 IPR027417 -
Eupl04g01482 569 Pfam Helicase conserved C-terminal domain 317 421 IPR001650 -
Eupl04g01482 569 SMART DUF4217_3 462 525 IPR025313 -
Eupl04g01482 569 SMART helicmild6 341 422 IPR001650 -
Eupl04g01482 569 Pfam DEAD/DEAH box helicase 105 276 IPR011545 GO:0003676|GO:0005524
Eupl04g01482 569 CDD SF2_C_DEAD 302 432 - -
Eupl04g01482 569 FunFam RNA helicase 298 528 - -
Eupl04g01482 569 SMART ultradead3 100 305 IPR014001 -
Eupl04g01482 569 MobiDBLite consensus disorder prediction 10 50 - -
Eupl04g01482 569 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 233 241 IPR000629 -
Eupl04g01482 569 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 314 471 IPR001650 -
Eupl04g01482 569 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 287 IPR014001 -
Eupl04g01482 569 Pfam Domain of unknown function (DUF4217) 463 523 IPR025313 -
Eupl04g01482 569 MobiDBLite consensus disorder prediction 542 569 - -
Eupl04g01482 569 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 81 109 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01482 Eupl-Chr4 24257322 24282143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01482 58 441 Eukaryotic Initiation Factors Gene Family AT3G19760 29.351 3.36e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01482 K13179 - vvi:100242258 903.279