Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01477 ATGGAACCGATGGACATCGTTGGGAAATCGAAAGAGGACGTTTCTCTACCAAAAGCAACTATGTTTAAGATCATTAAGGAGATGCTGCCGCCAGATGTTCGTGTCGCAAGAGATGCTCAAGATCTTCTCGTTGAGTGTTGTGTAGAGTTTATCAACCTCATTTCTTCCGAGTCCAACGAAGTATGTAGCCGAGAGGATAAAAGAACGATTGCACCTGAGCATGTCCTCAAGGCTCTTGAGGTTCTTGGATTTGGGGAGTACATTGAGGAGGTTTATGCTGCATATGAACAACATAAGCTAGAGACTCTGGACTCCCCAAAAGGTGGCAAGTGGACCAGTGGAGCCGAGATGACCGAGGAAGAAGCACTGGCCGAGCAGCAGAGGATGTTTGCAGAAGCGCGCGCAAGGATGAATGGTGGTGTGAACATCCCCAAGCAATCCGATTCAGAGCGGAGCTTAGAAAGCTAA 468 0.4808 MEPMDIVGKSKEDVSLPKATMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLISSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETLDSPKGGKWTSGAEMTEEEALAEQQRMFAEARARMNGGVNIPKQSDSERSLES* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01477 155 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 15 79 IPR003958 -
Eupl04g01477 155 SUPERFAMILY Histone-fold 12 140 IPR009072 GO:0046982
Eupl04g01477 155 Gene3D Histone, subunit A 4 141 IPR009072 GO:0046982
Eupl04g01477 155 PANTHER PROTEIN DR1 HOMOLOG 1 154 IPR044255 -
Eupl04g01477 155 FunFam Negative cofactor 2 beta 6 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01477 Eupl-Chr4 24168752 24181235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01477 1 145 CCAAT-DR1 Transcription Factor Family AT5G23090 83.562 8.39e-91 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Eupl04g01477 CBFD_NFYB_HMF 4.8e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01477 K21751 - atr:18431723 291.967