Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01474 ATGGGCTGGCCCATGGCCCGACCCGACTTTACTTCGGTCCATCTTGACTGGGCCCGACCTAGCGGGCCAAAAAAAAGCCAGTGCAAGTGGGCTGGAATTACTTGCAACCAGGCAGGAAGCATCACTGAAATAAACCTAACAGCTATGGGTTTACAAGGCAATTTGAGCAATCTACATAGACTTTCCCTCTATAACAATCAACTCTCTGGTTCCATTCCCCAAGAAATGGCTTCTTTAGTTACACTAAATTTGGACGGAAACAAGTTCTCCGGGCATCTGCCGCAAAATATATGCACACGTGGATCACTTAAGGCGTTTACAGCATCTAACAACCATTTTACAGGTCCCATCCCAAAAAGCTTGAGAAATTGCACGAGCTTAGTCAGACTCCGTCTTGAAAACAACCAACTCAGTAGTAACATATCAGAAGACTTTGGTGCATATCCAGACTTAGATTACATTAATCTAAGCTGTAATAGATTGTTTGGTGAGCTCTCACGAAATTGGGGAAAGTGCCGGAATTTGACAAACCTACACATCTCCAAAAATAATATTACGGGTAGGATACCACCTGAGTTTGGGAAGATGACCCAACTGACTTTACTTGATCTTTCTTCTAATCATCTAGTAGGAGGGATTCCAAAAGAACTGATGAGGTTGAAATCTCTGATAAACTTGAATTTGGGTGATAACCAACTTTCTGGAAGATTACCATTAGAAATTGGAATGTCATCCAATTTAGATCATCTTGATCTATCAACCAACAATTTGAGCGGACCAATACCCAAGCAACTAAGAGATTGTTTTCGACTGATATACTTGAATTTGAGTGCAAAGCGATTTGAAGGAAGCATTCCATTTCAGATTGGTCAGCTAGTTTCATTGCAAATTATATTGGATCTTAGCCAAAACAAGCTCAGTGGAGAGATACCATCACAGTTCAGTCAGTTACAAAAACTAGAAAAGTTAAATCTCTCCCATAATAATCTCGTTGGTTCCATCCCAACCTCACTTGGTGAAATGCTTAGTTTGACATCCATCGATATCTCACATAATAAACTCTCTGGTTCTATTCCACGTTCGTTTGGTGAGATAATCAGCTTGACATTCATTAATGTGTCCGACAATCAGTTGGAGGGTCCTCTTCCCAATGGCAAAGCCTTCCATGATGCTCCAATAGCAGCATTCAAAAACAACAAAGGTTTTTGTGGTGATATTCGATATTTTCAACCTTGTGATTCTTCCAAAGGTAATGGAAAAGGGTGGCTCAAAGTCCTTATTTCTATACTTTCTCTTTTTGGAACACTATTTCTTCTATTTATATGTATCAAAATTTCTTATATTTTTCACCGGAGAAAGAAAAACAAAAAGAAACAACAGATAGAAACACATAATGAAGATCTATTTTCAATATGGAATTATGATGGAAGAATAGTGTACGAGGACATCATCCAAGCTACAGAGGATTTTGATGCTAAATATTGCATTGGGATGGGAGGATATGGAAGTGTTTATAAAGCAGAGTTATTAACAGGTCAGGATGATGAGATGCTTGATGAGAAAAGTTTTAGAAGTGAAATTCGTGCATTAACAGCAATACGGCATCGAAATATCGTGAAACTTTATGGTTTCTGTTCACACACGAGACACTCATTTTTGGTTTATGAGTATTTGGAGAGGGGAAGCTTGGCTAAGGTCCTAAGTGAAGTAAAAGGAGCTAAAGAGTTTGATTGGATTAAAAGAACAAATGTTATTAAAGCTTTGGCCCAAGCTGTATCTTATATGCATCACAATTGCTCACCACCAATAGTTCATCGAGACATAACGAGCAACAATATTTTGTTGGATTCAAATTTTGAAGCGCGGGTATCTGACTTTGCCATCACTAGAATTTTAAAGCCTGATTCATCAAATTGGACTTCATTAGCAGGCACATGTGGATATATCGCTCCTGAGCTTGCTTACACTATGAAGGTGACTGAAAAATGTGACGTTTATAGTTTTGGGGTGGTAACACTTGAAGTGATAATAGGAAGGCATCCTGGAGAGCTCATATCTGTATCATCATCATCATCATCTTCTTCTTCTTCTTCTTCATTTTCATCTTTGACATCAATTGGGCAAAATATACTATTAAAAGATATGTTAGACCAGCGCCTTTCAACTCCCACAGTTCAAGTTGCGGAGGCAGTGTTCTCTATTGTTAAGTTAGCATTTGCTTGCTTACATGCCGATCCACAATCTCGACCGACCATGCAGCACGTGTCTCAAGAGTTGTCAACTGATAGGCCATCTTCACCACAGGCGTCGTTCCACACAGTTACATTGGTAGAACTATTGAATCATAAGATGTGA 2355 0.3911 MGWPMARPDFTSVHLDWARPSGPKKSQCKWAGITCNQAGSITEINLTAMGLQGNLSNLHRLSLYNNQLSGSIPQEMASLVTLNLDGNKFSGHLPQNICTRGSLKAFTASNNHFTGPIPKSLRNCTSLVRLRLENNQLSSNISEDFGAYPDLDYINLSCNRLFGELSRNWGKCRNLTNLHISKNNITGRIPPEFGKMTQLTLLDLSSNHLVGGIPKELMRLKSLINLNLGDNQLSGRLPLEIGMSSNLDHLDLSTNNLSGPIPKQLRDCFRLIYLNLSAKRFEGSIPFQIGQLVSLQIILDLSQNKLSGEIPSQFSQLQKLEKLNLSHNNLVGSIPTSLGEMLSLTSIDISHNKLSGSIPRSFGEIISLTFINVSDNQLEGPLPNGKAFHDAPIAAFKNNKGFCGDIRYFQPCDSSKGNGKGWLKVLISILSLFGTLFLLFICIKISYIFHRRKKNKKKQQIETHNEDLFSIWNYDGRIVYEDIIQATEDFDAKYCIGMGGYGSVYKAELLTGQDDEMLDEKSFRSEIRALTAIRHRNIVKLYGFCSHTRHSFLVYEYLERGSLAKVLSEVKGAKEFDWIKRTNVIKALAQAVSYMHHNCSPPIVHRDITSNNILLDSNFEARVSDFAITRILKPDSSNWTSLAGTCGYIAPELAYTMKVTEKCDVYSFGVVTLEVIIGRHPGELISVSSSSSSSSSSSSFSSLTSIGQNILLKDMLDQRLSTPTVQVAEAVFSIVKLAFACLHADPQSRPTMQHVSQELSTDRPSSPQASFHTVTLVELLNHKM* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01474 784 Pfam Protein kinase domain 496 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01474 784 Gene3D Ribonuclease Inhibitor 217 419 IPR032675 -
Eupl04g01474 784 FunFam Leucine-rich repeat receptor protein kinase MSP1 452 557 - -
Eupl04g01474 784 SUPERFAMILY RNI-like 44 382 - -
Eupl04g01474 784 SUPERFAMILY Protein kinase-like (PK-like) 472 759 IPR011009 -
Eupl04g01474 784 Pfam Leucine rich repeat 173 233 IPR001611 GO:0005515
Eupl04g01474 784 SMART LRR_typ_2 55 79 IPR003591 -
Eupl04g01474 784 SMART LRR_typ_2 292 316 IPR003591 -
Eupl04g01474 784 SMART LRR_typ_2 196 220 IPR003591 -
Eupl04g01474 784 SMART LRR_typ_2 317 341 IPR003591 -
Eupl04g01474 784 ProSitePatterns Tyrosine protein kinases specific active-site signature. 603 615 IPR008266 GO:0004672|GO:0006468
Eupl04g01474 784 Pfam Leucine Rich Repeat 319 339 IPR001611 GO:0005515
Eupl04g01474 784 Pfam Leucine Rich Repeat 343 363 IPR001611 GO:0005515
Eupl04g01474 784 FunFam MDIS1-interacting receptor like kinase 2 558 765 - -
Eupl04g01474 784 Gene3D Phosphorylase Kinase; domain 1 445 557 - -
Eupl04g01474 784 ProSiteProfiles Protein kinase domain profile. 490 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01474 784 Gene3D Transferase(Phosphotransferase) domain 1 558 774 - -
Eupl04g01474 784 PRINTS Leucine-rich repeat signature 317 330 - -
Eupl04g01474 784 PRINTS Leucine-rich repeat signature 247 260 - -
Eupl04g01474 784 PANTHER LEUCINE RICH REPEAT KINASE 2 299 766 - -
Eupl04g01474 784 Gene3D Ribonuclease Inhibitor 8 144 IPR032675 -
Eupl04g01474 784 Gene3D Ribonuclease Inhibitor 149 216 IPR032675 -
Eupl04g01474 784 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 76 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01474 Eupl-Chr4 24087763 24092236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01474 53 651 Receptor kinase-like Gene Family AT4G08850 46.240 1.68e-178 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Eupl04g01474 Pkinase 2.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01474 - - ming:122074425 823.157