Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01442 ATGTTCGTTTATCGATCGACAACACGATCGATAAATCGTGACATCCCGAAAAACAACCAAGAACTTGGTGTACACCACTTCAAGCGCACTCCAGAGTCCGAAAAGCAAGCACAATGTGCTGTGTGCTTGTGTGATATTATAGAAGGAGAAGAGATCAGAAAGCTGAGATGTGACCATCTATTTCACAAAGTTTGCTTAGATAGATGGGTTGGATATCAACATTCTACATGTCCCATTTGCCGGGGACCGGTAGTACCGCGGAGAATGGTTGCCAAGCTTGGACAGAAACTGGAGTTTGTAGAAGAGCTGATTTTTATGTTCGCTTCATCTCGTTCTTCGGATGATCGATGTAACTGGTGGCTAAGGTAA 369 0.439 MFVYRSTTRSINRDIPKNNQELGVHHFKRTPESEKQAQCAVCLCDIIEGEEIRKLRCDHLFHKVCLDRWVGYQHSTCPICRGPVVPRRMVAKLGQKLEFVEELIFMFASSRSSDDRCNWWLR* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01442 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 88 IPR013083 -
Eupl04g01442 122 SUPERFAMILY RING/U-box 33 88 - -
Eupl04g01442 122 PANTHER - 26 95 - -
Eupl04g01442 122 Pfam Ring finger domain 38 81 IPR001841 -
Eupl04g01442 122 ProSiteProfiles Zinc finger RING-type profile. 39 81 IPR001841 -
Eupl04g01442 122 SMART ring_2 39 80 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01442 Eupl-Chr4 23289896 23290264 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01442 20 110 C3H Transcription Factor Family AT3G43430 36.538 6.44e-16 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01442 K16282 - nnu:104600714 129.028