Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01441 CTACTCACTGCTCTCTATAAAACCCACTTGCAAATTGCAAGTTCTCCTTGTGAAATGTACAAAAATATGGGTATCCCAGCAGTTCTAGCATTTCTACCCCTCTTTCACCTTATCATCCCATGCATTTGCTTAATTCTCTTATCAACGTTCGTTTATCGATCCGCAACACGATCGATAAATCGTGACATCCCGAAAAACAGCCAAGAACTTGGCGTACGCCACTTCAAGCGCACGCGAGAGTCCGAAAAACAAGCACAATGTGCTGTGTGCTTGTGTAGTATTGAAGAAGGAGAAGAGATTAGAGAGCTGAGATGTGACCATCTATTTCACAAAATTTGCTTAGATAGATGGATTGGACATCAACATTCTACATGTCCCCTTTGCCGGGGTCCGGTGTTACCGCGGAGAATGGTTGCCAAGCTTGGACAGAAATTGGAGCTTGCGGAAGAGTTGATTTTTATGTTTGCTTCATCTCGTTCGTCCGATGATCGATGTAACTGGTGGCTAAGCCATGGGCATCATTTTGATGGCCATCATCAACCCATGATGGCTTTCTCAACCTTTGGCATCCCTCCACGTGCCACTGACAACCTTAGGTGA 600 0.45 LLTALYKTHLQIASSPCEMYKNMGIPAVLAFLPLFHLIIPCICLILLSTFVYRSATRSINRDIPKNSQELGVRHFKRTRESEKQAQCAVCLCSIEEGEEIRELRCDHLFHKICLDRWIGHQHSTCPLCRGPVLPRRMVAKLGQKLELAEELIFMFASSRSSDDRCNWWLSHGHHFDGHHQPMMAFSTFGIPPRATDNLR* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01441 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 135 IPR013083 -
Eupl04g01441 199 SMART ring_2 87 128 IPR001841 -
Eupl04g01441 199 Pfam Ring finger domain 86 129 IPR001841 -
Eupl04g01441 199 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Eupl04g01441 199 CDD RING-H2_PA-TM-RING 86 129 - -
Eupl04g01441 199 PANTHER - 37 143 - -
Eupl04g01441 199 SUPERFAMILY RING/U-box 81 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01441 Eupl-Chr4 23284091 23287070 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01441 68 158 C3H Transcription Factor Family AT3G43430 37.500 7.71e-16 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01441 K16282 - nnu:109114584 139.813