Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01440 ATGGGTATCCCATCAGTTCTAGCATTTCTACCCCTCCTATGCATTTGCATAACTCTCCTATCAAAGTTCGTTTTTCGATCGAAAACACAATCGATGAACCGTGACATCCCGAAAAACAGCGGAGAACTTGGCGTAAGCCACTTCAAGCGCACGCCAGAGTACGAAAAACAAGCACAATGTGTTGTGTGCTTGTATGAGATTGAAGAAGGGGAAAAGATCAGAAAGCTGAGATGTGACCATCTATTTCACAAAGTTTGCTTAGATAGATGGCTTGGACATCAACATTCTACATGTCCGCTTTGCCGGGGTCCGGTATCACCGCGGAGAATGGTTGCCAAGCTGCTTGGACAGAAATTGGAGCTTGTGGAAGAGCTGATTTTTATGTTCGCTTCATCTCGTTCGTCTGATGATCGATGTAACTGGTGGCTAAGCGGAGAACTTGGCGTACGCCACTTCAAGCGCACGCCAGAGTCGGAAAAACAAGCACAATGTGCTGTGTGCTTGTGTGAGATTGAAGAAGGAGAAGAGATCAGAGAACTGAGATGTGACCATCTGTTTCACAAAGTTTGCTTAGATAGATGGCTTGGACATCGACATTCTACATGTCCTCTTTGCCGGGGTCCTGTATTACCACGGAGAATGGTTGCCAAGCTTGGACAGAAATTGGAGCTTGTGGAAGAGTTGATTTTTATGTTCGCTTCATCTCGTTCGTCCGATGATCGATGTAACTGGTGGCTAAGGTAA 744 0.4583 MGIPSVLAFLPLLCICITLLSKFVFRSKTQSMNRDIPKNSGELGVSHFKRTPEYEKQAQCVVCLYEIEEGEKIRKLRCDHLFHKVCLDRWLGHQHSTCPLCRGPVSPRRMVAKLLGQKLELVEELIFMFASSRSSDDRCNWWLSGELGVRHFKRTPESEKQAQCAVCLCEIEEGEEIRELRCDHLFHKVCLDRWLGHRHSTCPLCRGPVLPRRMVAKLGQKLELVEELIFMFASSRSSDDRCNWWLR* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01440 247 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Eupl04g01440 247 SUPERFAMILY RING/U-box 163 213 - -
Eupl04g01440 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 212 IPR013083 -
Eupl04g01440 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 109 IPR013083 -
Eupl04g01440 247 ProSiteProfiles Zinc finger RING-type profile. 60 102 IPR001841 -
Eupl04g01440 247 SMART ring_2 164 205 IPR001841 -
Eupl04g01440 247 SMART ring_2 60 101 IPR001841 -
Eupl04g01440 247 SUPERFAMILY RING/U-box 54 108 - -
Eupl04g01440 247 SMART ringv_2 163 206 IPR011016 GO:0008270
Eupl04g01440 247 Pfam Ring finger domain 59 102 IPR001841 -
Eupl04g01440 247 Pfam Ring finger domain 163 206 IPR001841 -
Eupl04g01440 247 CDD RING-H2_PA-TM-RING 59 102 - -
Eupl04g01440 247 PANTHER - 151 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01440 Eupl-Chr4 23266630 23276838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01440 147 235 C3H Transcription Factor Family AT3G43430 40.196 6.30e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01440 K16282 - nnu:104600714 129.028