Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01439 ATGGAAGGCGAGCCGATTGAAGACGAATTCTCCCTTCGCAGCAACGAATCTAGAGATTATCCCATACCAGGGATGGGATCTGTCGTTGCTACAGTCAGCGGCTACCACGGTTCAGAGCGGTTTAAACTCATCAAGCTCATCAACCAAAGCGGTGCTAACTACATAGGGGCAATGTCAAAATCGACGACACATTTGGTATGTTGGCGATTTGAAGGAAGGAAGTATGAATTGGCTAAGAACTTTGGAACAATTGTAGTTGGCCATCATTGGTTTGTGGATTGTGCTAAGGAAGGGAAACGCCTTCCTGAGCGTCACTATATCATGCAGAGTGGACAACAGGCTGGACCCTTATTATGGGAAGTGCCAGTAGTTGGTGAGAAAGAGAGTCTTTTGACTAGAAAGAAAGGTAATGTGTTTTCTGATCGGTCCAATATGTGCAATGACACCAGAGCACTAAAGATTGATAAGGGGTGTGCACGGCGTGGTTCTTGTTTATTAACCGAGAATTTATTTCCTGATTCGGGAACGAATGATAAGAATTTCCATAAAATAAAGAAAACTGTGGGTCAAAAATCTTCGAGGCAGGACTGCAGGTGGACCAACAAAGATTGTTCTCTGGAAAAACCATTATCTGGATTAGTTAGAGTGCAGCATGAAGAATCTAGTTCATATTCCCCCATGCTTTCTGCGAGACACAAAAGGAGTGTTTGCAGTGCTGTTGGAAGCACTACTACAATCGAACCTACTCGCAAGGGTCGACGGCTTGTTAAGAAGAATGCTTCCAGGGACATCTTGGAGTCTGCTACATTAAATTGCAAGCAAGACTGTTCTTCGACTGGAATTTTTAACCGGCTTAACAACATCACTGCTTTATCTAATGATTCAGATGATCTGAGAGACTGTTCCCAAACTGAAATCTGTAACCGACTTAACATCACGGCTGCATCCAATGATATATATGATTTGAGAAATGAGAATGCATTATCACCCCAAGGAACACCTTTGGAGGATGACTTGTGCAATGGACAAAATAGGAATGAACTGCTGGAAGACGTTGAAGACATCACAGAGTTGAATAACATTACTGCTTCTAATGGTTCAAATATATTGAGTGAGGATGCACTTCCTACCCGAGAAAGGACTTCTCAGAATGGGTTTTCTGATTTTGAGGAGAACATGGATGGAGTGCTGAAAGATGTTGGTGAGTTCGGAGAAAGAACTGGATTGCCTTCTTCAACAGAGTTATCATGTGTTATATGTTGGACAGATTTTAGTTCGACAAGGGGGGTATTACCATGTGGACATCGATTCTGTTATTCGTGCATCCAAGGCTGGTCTGATCATATGGCTTCAAGAAGAAAGGTTTCAACATGCCCTTTGTGCAAGGCTAGTTTTGTGAGCATCACAAAGGTGGATGGTGCTGCCTCTTCTGATCAAAAAATATACTCGCAGACTATTCCATTCGCCTCGTCTGCAACAGATATTTTCGTGCTTCCTGATTGGGAGATTTCCAGTTTTAGAGCCCAGTCCTCAGCAGCATCAGTTTGTTGTGAATGTCGCTCCCGAGAACCTGAGGATCTTCTTATTAGCTGTCGTCTCTGCCGGAGTGGATGGATTCATTCCTACTGCCTAGACCCTCCTTTGGTTCCGTGGACATGCCTTAACTGCAGGGATCTCCGAATGCTCTATCATCGCATCCATTAG 1704 0.4366 MEGEPIEDEFSLRSNESRDYPIPGMGSVVATVSGYHGSERFKLIKLINQSGANYIGAMSKSTTHLVCWRFEGRKYELAKNFGTIVVGHHWFVDCAKEGKRLPERHYIMQSGQQAGPLLWEVPVVGEKESLLTRKKGNVFSDRSNMCNDTRALKIDKGCARRGSCLLTENLFPDSGTNDKNFHKIKKTVGQKSSRQDCRWTNKDCSLEKPLSGLVRVQHEESSSYSPMLSARHKRSVCSAVGSTTTIEPTRKGRRLVKKNASRDILESATLNCKQDCSSTGIFNRLNNITALSNDSDDLRDCSQTEICNRLNITAASNDIYDLRNENALSPQGTPLEDDLCNGQNRNELLEDVEDITELNNITASNGSNILSEDALPTRERTSQNGFSDFEENMDGVLKDVGEFGERTGLPSSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQGWSDHMASRRKVSTCPLCKASFVSITKVDGAASSDQKIYSQTIPFASSATDIFVLPDWEISSFRAQSSAASVCCECRSREPEDLLISCRLCRSGWIHSYCLDPPLVPWTCLNCRDLRMLYHRIH* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01439 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 503 560 IPR013083 -
Eupl04g01439 567 ProSitePatterns Zinc finger RING-type signature. 433 442 IPR017907 -
Eupl04g01439 567 Gene3D BRCT domain 24 113 IPR036420 -
Eupl04g01439 567 PANTHER F5A8.9 PROTEIN 8 564 - -
Eupl04g01439 567 SUPERFAMILY RING/U-box 413 468 - -
Eupl04g01439 567 SUPERFAMILY FYVE/PHD zinc finger 502 558 IPR011011 -
Eupl04g01439 567 ProSiteProfiles BRCT domain profile. 17 108 IPR001357 -
Eupl04g01439 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 485 IPR013083 -
Eupl04g01439 567 Pfam twin BRCT domain 28 90 IPR001357 -
Eupl04g01439 567 ProSiteProfiles Zinc finger RING-type profile. 417 462 IPR001841 -
Eupl04g01439 567 Pfam Ring finger domain 416 462 IPR001841 -
Eupl04g01439 567 SMART BRCT_7 23 98 IPR001357 -
Eupl04g01439 567 SMART ring_2 417 461 IPR001841 -
Eupl04g01439 567 SUPERFAMILY BRCT domain 21 108 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01439 Eupl-Chr4 23227731 23259124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01439 63 106 Core DNA Replication Machinery Family AT4G02110 55.556 8.16e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01439 - - tss:122650166 623.624