Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01421 ATGGGAAGCGATAGCGAAACAGAGAAATCTCAGAAGGAGAGGAAGAAGATGTTGGCCCTCGCTCCAATAGCGAAACCTCTAGCAGGGAAGAAACTTTGCAAGAGAACTCTTAAGCTCGTCAGAAGAGCTACTGAATCCAAATGCTTGAAGAGAGGAGTGAAGGAGGTTGTTAAGAGCATTCGGCGTGGTAACAAAGGATTATGCGTTATAGCTGGAAACATTTCTCCAATTGATGTTATCACACATGTTCCAATCTTATGCGAAGAGGCTGACATCCCATATGTATATGTTCCCTCGAAAGAAGATCTTGCTACTGCCGGAGCTACCAAGAGGCCTACATGCTGTGTATTGGTGCTAACTAAGCCCACCAAGGGGGAGCTGAGCCAGGAGGAACAAGAGAAACTGAAGGCAGATTATGGCCAAGTTGTATCAGATGTGGCTGAAATCACATCCTCCCTTTTTTAA 465 0.4538 MGSDSETEKSQKERKKMLALAPIAKPLAGKKLCKRTLKLVRRATESKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEADIPYVYVPSKEDLATAGATKRPTCCVLVLTKPTKGELSQEEQEKLKADYGQVVSDVAEITSSLF* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01421 154 PRINTS Ribosomal protein L7A/RS6 family signature 94 108 IPR018492 -
Eupl04g01421 154 PRINTS Ribosomal protein L7A/RS6 family signature 84 94 IPR018492 -
Eupl04g01421 154 PRINTS Ribosomal protein L7A/RS6 family signature 49 63 IPR018492 -
Eupl04g01421 154 PRINTS Ribosomal protein L7A/RS6 family signature 68 81 IPR018492 -
Eupl04g01421 154 Gene3D - 14 144 IPR029064 -
Eupl04g01421 154 PRINTS High mobility group-like nuclear protein signature 22 35 IPR002415 GO:0003723|GO:0005730
Eupl04g01421 154 PRINTS High mobility group-like nuclear protein signature 35 50 IPR002415 GO:0003723|GO:0005730
Eupl04g01421 154 PRINTS High mobility group-like nuclear protein signature 52 62 IPR002415 GO:0003723|GO:0005730
Eupl04g01421 154 PRINTS High mobility group-like nuclear protein signature 96 108 IPR002415 GO:0003723|GO:0005730
Eupl04g01421 154 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 37 120 IPR004038 -
Eupl04g01421 154 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 12 144 - -
Eupl04g01421 154 SUPERFAMILY L30e-like 15 129 IPR029064 -
Eupl04g01421 154 FunFam H/ACA ribonucleoprotein complex subunit NHP2 17 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01421 Eupl-Chr4 22832933 22840919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01421 42 140 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 29.126 1.13e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01421 K11129 - nnu:104600514 293.123