Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01400 ATGGCGGAGGTTGCAGACTATTATTTCCCTGGTGAAGAAGACGAAGACGAACAAGTACGAGGAGAGATTGAAACCCTAGATTCCATCCATTACTGGTCCAACGAGTTTGACCACGATGACATATACTCCTCCGATACCGATTCCTTCTCTCCCCAACTCTCTGAGTTCGTCCCCTCAGATCATTCTGTCCACGCTCAATTCTTCGTCGACGGAGACCACATCGAAGAACGCGAAGCCTGCGTCGAGATTGGGGGTTCCGATTCCGATTCTGATTCCGATTTGAACTACTACAACCGCGAAGATCAGGTAAATCTCGTTTTCAATTTGTTCGAACGCTGTGCTGAACAATCTCAATCTCATGTTGTTGATAATAATGGTTCCGGGTTGAACCCATTTTCGGATAATTCGAGTTTTAGGGTTGTTGATGGAAATGACGAAATGGGTTCGAATCTAGAGTTAGGGTTAGATTTGGGTTTTGAAAGACAAGGTGATGAGGATAATGATAATGGTGGGTTCATGATTGCGGACTGTGGTGAGGAGTTTTTTGTGGGTAGAAGGGCTTCTGTGTTGGAATCTGGTGAGCCTTCTGCGATACGTGCGGTGGCACCGTTTGGGGACGGTCTTCGAGTTGTTGGGATTGGATCCGATTCGGACGAGGAGGTGGAGGAGGTAGTTGGGGGGATTGATTTGCATTCTGAGTTTGATGATGATGGGTCGGATCAAAATCCAGACGATTTGGGTCTTCCTCTTTGTTGGGATTGTCTCCGTTTGGAGGATCAGAGGGAGTCGGTAGAAGAGTTTGAGTGGGAGGAAGTTGATGAGAGGGTCGATGAGAGAGAAGTTCTGAGCATGGTGATTGACCCCGATGAGGAGAGATCGGTTTCAACCGAAACTCAATCTGAAGAAGCAGTTGAAGGCCTGGAAGAAGCGATGAGAAATATTGAGTGGGAAGTTCTTTTGGCAGTCAACAATTTGGGGAGGAACCCTGAATTAGACCACGAAGCAGAACCTTATCTGGCTGATCATGATGATTACATGTACCCTGCAGAGTACGTGATGCTTTTCGGGCAATTCACAGAGAATGAAAGTTCTCTGAAGGGTAGTCCGCCGGCTGCCAAATCTTTTGTGGATAATCTTCCATCGGTTGTATTAACTCAAGAAGATGTGCAGAACAAAAATGGCTTTTGTGCAGTTTGCAAAGACGAGATCTCCACAGAGGAAAAAGCTAAGAAGCTCCCTTGCTCCCACTACTACCATGGAGACTGCATTTTGCCATGGCTGAAAATTAGGAATACTTGCCCTGTTTGTCGGTATGAATTGCCTACAGATGATCCTGATTATGAGCAGAGGAAGAGCCAAAGGGCTGGTCGTGGCCTCCCAGGGGATACTCAGGTCAGATATAATTTTGAAATATTTCCTGAACAATAG 1428 0.4629 MAEVADYYFPGEEDEDEQVRGEIETLDSIHYWSNEFDHDDIYSSDTDSFSPQLSEFVPSDHSVHAQFFVDGDHIEEREACVEIGGSDSDSDSDLNYYNREDQVNLVFNLFERCAEQSQSHVVDNNGSGLNPFSDNSSFRVVDGNDEMGSNLELGLDLGFERQGDEDNDNGGFMIADCGEEFFVGRRASVLESGEPSAIRAVAPFGDGLRVVGIGSDSDEEVEEVVGGIDLHSEFDDDGSDQNPDDLGLPLCWDCLRLEDQRESVEEFEWEEVDERVDEREVLSMVIDPDEERSVSTETQSEEAVEGLEEAMRNIEWEVLLAVNNLGRNPELDHEAEPYLADHDDYMYPAEYVMLFGQFTENESSLKGSPPAAKSFVDNLPSVVLTQEDVQNKNGFCAVCKDEISTEEKAKKLPCSHYYHGDCILPWLKIRNTCPVCRYELPTDDPDYEQRKSQRAGRGLPGDTQVRYNFEIFPEQ* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01400 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 356 443 IPR013083 -
Eupl04g01400 475 ProSiteProfiles Zinc finger RING-type profile. 396 437 IPR001841 -
Eupl04g01400 475 SMART ring_2 396 436 IPR001841 -
Eupl04g01400 475 FunFam E3 ubiquitin-protein ligase RING1-like 357 443 - -
Eupl04g01400 475 Pfam Ring finger domain 396 437 IPR001841 -
Eupl04g01400 475 SUPERFAMILY RING/U-box 376 443 - -
Eupl04g01400 475 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 283 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01400 Eupl-Chr4 22533961 22535971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01400 246 443 C3H Transcription Factor Family AT5G60820 43.779 7.59e-45 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01400 - - nnu:104600329 562.377