Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01394 ATGGATATGAGTGACAAGGATAAATTTGGGTTGGAAAAGAGGAGTGGGGATCCTTTGAACTACCATTCATCAAATATGTCCTCAGACTGGCGATTTGGCGGAGCCAATCTGACGAATCAGCCTTTGGGTTTAGTTCCTACAGGTAATTCTACCGCCGTCTGCAAAGGGGATCTGCTGGGTTCTTCTGCCTGTTCCTCTGTTTCAATGGGGGACTCATTTTGCCCAACCCTTTGGGAACACCCCAATTCACAAAACATGGGTTTCTGTGACAATAATGTTCAGACCAGTACGAGTGCCTCCAACACAGAAGCCATTAAGAAAGGGGTTCCTGGCTCTTTGAGAACAAGTATTGATACAACGCTGGATATGGGTTGGAATCCCCCAAATCCGATGTCGAAAGGGGCTGTTTTCTTACAAACCGGTGCCGGGATCCTCCCCCAGAGCCTATCACAGTTCCCAGCTGATTCTGCCTTCATTGAACGAGCTGCCAGGTTCTCATGCTTCAATGGTGGGAATTTTAGTGATATGATTAACCCTTTTAGCATATCAGAATCTCTGAATCCTTATTCTAAGAGCGGAGCGATGCAAAGCCCCCCAGAGGTTCTGTTGCCTAATGGTTTGAAACCTACACTGGGAGCCCATTCTCAGAAGAATGAGCTGAACATGGCTGAAATTGCCAAAGATGTGTCTCTATCTGCCGAGCATGGGCCCACCGAAGGGAGTCCAATCAAGAATGAGAGAGAAATGCGAAGCTTCGTAAGACCTCCAGATGAAGCAAAACACGAAATTGGTGTGTCTAGCAATGAGTCTGATGAAGGTGAGTTTAGTGGTGTTGGTGGCCAAGAGGATCCTTCTATGTTGGATAGTGTTGGCGGGGAACCTTCTCCGGTCAAAGGACTTGGTACAAAGAAAAGAAAAAGGGCTGGTCAGGATACTGAGCTTGACCAGGCTAGAGGAGCCTCACAACTTCCTGGTGAAGCTGCAAAGGATAACACTGAACCTAAACAGAACGGTGATCAAAACCCAACTTCAGCCACCACTAAGGCTACTGGAAAGCATGGTAAAGATGGCTCTCAAGCTTCGGATGCCCCCAAGGAAGATTATATTCATGTTAGAGCGCGAAGGGGCCAGGCTACAAACAGCCACAGTCTTGCAGAAAGAGTAAGAAGGGAAAAGATCAGTGAAAGGATGAAGTTTCTTCAGGACCTTGTACCTGGTTGCAGCAAGGTCACAGGCAAGGCTGTCATGCTTGATGAGATCATTAACTATGTACAATCACTGCAACGGCAGGTTGAGTTTTTATCAATGAAGCTCGCAACTGTGAATCCACGGCTTGAATTCAACATAGAAGGGCTCCTCGCAAAAGATATCCTTCAGTCGCGAGGTGGCCCCTCATCTACAATAGGGTTCTCACCAGATATAAGTATGGCTCATCCTCAGCTGCATCCATCCCAACAGGGCTTGATCCAAGCAGGAATTCCTGGCATGGGAAACCCCTCGGACACACTTCGGAGATCCATTAATTCTCAACTAACGGCCATGAATGTTGGATATAAGGAGCCTACTCAGATACCCAATGTGTGGGATGATGAACTTCACAATGTTATTCAGATGAGCTTTGGCGCCAATGTCCCTTTCAACGGTCAAGAATTAAATAGTTCTCTACCACCAGGCCACATGAAAGTTGAGCTCTGA 1695 0.4702 MDMSDKDKFGLEKRSGDPLNYHSSNMSSDWRFGGANLTNQPLGLVPTGNSTAVCKGDLLGSSACSSVSMGDSFCPTLWEHPNSQNMGFCDNNVQTSTSASNTEAIKKGVPGSLRTSIDTTLDMGWNPPNPMSKGAVFLQTGAGILPQSLSQFPADSAFIERAARFSCFNGGNFSDMINPFSISESLNPYSKSGAMQSPPEVLLPNGLKPTLGAHSQKNELNMAEIAKDVSLSAEHGPTEGSPIKNEREMRSFVRPPDEAKHEIGVSSNESDEGEFSGVGGQEDPSMLDSVGGEPSPVKGLGTKKRKRAGQDTELDQARGASQLPGEAAKDNTEPKQNGDQNPTSATTKATGKHGKDGSQASDAPKEDYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLEFNIEGLLAKDILQSRGGPSSTIGFSPDISMAHPQLHPSQQGLIQAGIPGMGNPSDTLRRSINSQLTAMNVGYKEPTQIPNVWDDELHNVIQMSFGANVPFNGQELNSSLPPGHMKVEL* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01394 564 MobiDBLite consensus disorder prediction 1 15 - -
Eupl04g01394 564 MobiDBLite consensus disorder prediction 229 365 - -
Eupl04g01394 564 MobiDBLite consensus disorder prediction 1 22 - -
Eupl04g01394 564 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 264 484 IPR024097 GO:0006355
Eupl04g01394 564 CDD bHLH_AtBPE_like 367 452 - -
Eupl04g01394 564 MobiDBLite consensus disorder prediction 334 354 - -
Eupl04g01394 564 FunFam Basic helix-loop-helix transcription factor 374 446 - -
Eupl04g01394 564 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 375 445 IPR036638 GO:0046983
Eupl04g01394 564 MobiDBLite consensus disorder prediction 240 268 - -
Eupl04g01394 564 SMART finulus 383 433 IPR011598 GO:0046983
Eupl04g01394 564 Pfam Helix-loop-helix DNA-binding domain 380 428 IPR011598 GO:0046983
Eupl04g01394 564 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 377 427 IPR011598 GO:0046983
Eupl04g01394 564 Gene3D - 374 448 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01394 Eupl-Chr4 22422232 22425853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01394 1 542 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 45.803 2.49e-127 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl04g01394 HLH 7.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01394 - - nnu:104600291 824.698