Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01384 ATGAAAAACGTCACTCAATTTCAGGGGAAACAAAATTTAAAAAAAAAAGACATTATTAAAGTACCTGACTGGTTCATTGGGATATTGCCATCTCTTCTTGATCCATATTTCCTAAAACAAATCTGGTTTGACATGGGTAAGGAGAGCTCAGGATCTCATAACACAACAGAAAATTCAGGCAGCAGCTCGGATCGGATGTCGCTGGTGGATGATCCAAACCCGACAGTAATTCTTTCCCGGTCCCTATTGGCATCTATTTCAGAGATCACAGGCTCAGTGGTATGCATAGATATAGAACAGGAGAACTTCATGGAAATCGGATGCTATTTAGAACGTACTTCGCCAGCCATAATGGAGTTGCAAGCGTCCAAAAATACCCCACCAAATGCAACAGAGATTCTACAATCTCTATCCGAAAGTATCAATCTTGCCAAGTATCTCGTGGGGAAATGTCGTACTAGGGCTCATTCCATTCCAGACCCTGAAGTCAGAAGCATCATAGAACAACTAGAAGGTGTGATAAGAAACATAGGGGAAGGCCTGAGCTTAATACCATCCTCGACATTCAGGGACCAAGAGTATGCAGAAGTTGCAGTCCAGTCTCTTTCGAGGGAGATGCAAAGCGCTCACTTTGAGATTAGTCAAATTGAAGTCTTGGAGCCCAAAGAGACAAAATTACAGATCCTATCTTCAGAGGATTTACCACAGGGAGAATCAGCTTTGACAGAAACTGACCTTTACTCCATCCATGTAGAAGTATCCACAGAGAATTTTCCGTCATTAGATATGCGACAACCGATTGATTATCTCAGAGGTATGAGCAACAAAGAGAAAGTGAAACATAGAAGCAATAGCCCCATATCGTTGAAGACATTACCACAGATGGTTGAGTACATGGAGCCCCTATACAAGACATTCTACTGCCCATTAACTGGAAAGATAATGGACGACCCAGTCACCATAGCAAGTGGTGTGACCTATGAGAGGAGGGCCATAACAGAGTGGTTCAAAAACTATGGAGCCAGTTTAGAGGATGTCATCTGTCCGACCACAGGGAAGAAGCTGGAGAGTAGAATACTGACTACCAACATAGCTTTAAAGACTACAATAGAAGAGTGGACAGAGAGAAATGAAACAACAAGAATCAAAGTTGCCCGAGCTGCTTTGTTGTTAGCCAGCTCAGACAGTAAGATACTTGAAGCGCTAAAAGACTTGCAACATCTCTGCCAGAGGAAACAATACAACAAGGTACAGGTGTATAACATTGGAATGATACCATTACTCACTCAGTTTCTGGAATACAAAGACAGGAATGTGAGGTGTGCAACTCTGGAAACATTGCGGTTATTGGTGGAGGAGGATGATGAGGGCAAGGAGATGATTGCTAAGACAAAAGCCATTACAACGACTATCAAGATGTTGTCGACTAATCACCTTCCAGAGAGGCATGCATCTTTGTCATTCTTGCTAGAGCTTTCGATATCTGAATCACTGTGCGAGAAGATTGGATCAGTTACTGGGGGGATTCTGATGCTGATCATGATGAAATACAACCAGTCCTTTGACGCTTTTGCTGCCGAGAAAGCAGATAAAATCCTAAAGAACTTGGAGAGTTCTCCAGAAAATATTAAGTGCATGGCAGAAAATGGCCTCTTGGAACCCCTTCTAAACCATCTTATTGAAGGATCAGAGGAGATGCAGATGGAGATGGGGAGCTACCTTGGACAAATCGTTCTTGGGCATGAAACTAAAACCTATGTGGCTGAGAAAGCTTCTCCTACTCTGATCAAAATGGTGCACAGTGAGAACACTCTAACAAGGAAGGCAGCATTCAAAGCTCTTGTCCAAATCTCATCTTACCACCCAAACAGCAGAACACTTGTAGAAGCCAGCATTGTGCCAATCATGATTGAAGAGATCTTCACACGGAGAATGTACAATGAACCCATGAACTCCAAGGAAGAATCCGCTGCAATCCTGGCGAACATACTCGACTCTGGGATTGCTCTTGAGACCCTCCAAGTAAACACCCATGGACACACAATGACATCAGACTACATTATCTACAACCTCATCCACATGCTTAAGAACTCAACCCCGGATGAACTCAACATCAACCTCATAAAAATCCTCCTCTGCCTAACAAAATCCCCCAAATCAACGGCCACCATTGTTTCCATGGTCAAAGAGACAGAAGCGAGCTACACCCTCATCGAACTCATCAACTCCCCACATGAGGGACTCGGAATTGCATCCATTAAACTACTCCTCAAACTCACACCCTACATGGGCCACACACTAGCAGACAGACTATGCAAGACCAGAGGCCAACCTGAGAACCTAATTAAGAATCCAATTGAAACAAGCCAAATAACCGAAAAACACGCAGTTTCAGCTAACTTCCTATCGAATCTTCCCCACAAGCACTTACCACTCAATCTAGCCCTCCTTCACAAAGACACAGTTACCACAATCATACATACAATCAAAGAGATCCAAAGAAGTGGAACAAGAACAAGCAAGTTTGCAACTTCTTACCTAGAAGGTCTAGTGGGTATTCTTGTCAGATTCACTACTACACTACATGAACCACAAATACTACTACTAGCAAGAAATCACAACCTCACAGCAGTATTCACAGGACTGCTCATCAGAATAGCAAGTGATGAAGTTCAGAGATTATCAGCAATTGGGTTGGAGAATCTTTCAGCAGAATCAATAAATCTATCAAAACCACCACAAATCAAGAGACCCAAGTTCATGAAGTTGTTTTACTTACCTAGGTTTCTATCTTTTGGGTCATCTAAGCAGAGAAGATTACAGGTGTGCCCAGTTCACAGAGGGATTTGCTCTTCACAATCCACCTTTTGTTTACTTGATGCAAAGGCTGTAGAGAGGTTGTTGGTTTGTTTGGAGCATGAGAATGTTGTGGTGGTTGAGGCTGCACTATCAACTATTTGTACTTTGTTGGATGACAAGGTTGATGTGGACAAGAGTCTGAGTGTATTGACTGGGTTGAATGCTATACAGCATGTTTTGAATGTGTTGAGAGAGCACAAACAAGAGGGTCTATGGCAGAAATCATTTTGGGTGATTGAGATGTTCTTGATGAAAGGTGGAGACCAGTCTGCTTCTGATATATCACAGGACAGGTTGTTTTCTTCTACATTGGTGACTGCTTTTCATCATGGGGATGGGAAGACAAGGCAGATAGCTGAGAAGATCTTGAGGCATTTGAATAAGATGCCCACCTCCTCTACTAAGTTCTTATAG 3273 0.4271 MKNVTQFQGKQNLKKKDIIKVPDWFIGILPSLLDPYFLKQIWFDMGKESSGSHNTTENSGSSSDRMSLVDDPNPTVILSRSLLASISEITGSVVCIDIEQENFMEIGCYLERTSPAIMELQASKNTPPNATEILQSLSESINLAKYLVGKCRTRAHSIPDPEVRSIIEQLEGVIRNIGEGLSLIPSSTFRDQEYAEVAVQSLSREMQSAHFEISQIEVLEPKETKLQILSSEDLPQGESALTETDLYSIHVEVSTENFPSLDMRQPIDYLRGMSNKEKVKHRSNSPISLKTLPQMVEYMEPLYKTFYCPLTGKIMDDPVTIASGVTYERRAITEWFKNYGASLEDVICPTTGKKLESRILTTNIALKTTIEEWTERNETTRIKVARAALLLASSDSKILEALKDLQHLCQRKQYNKVQVYNIGMIPLLTQFLEYKDRNVRCATLETLRLLVEEDDEGKEMIAKTKAITTTIKMLSTNHLPERHASLSFLLELSISESLCEKIGSVTGGILMLIMMKYNQSFDAFAAEKADKILKNLESSPENIKCMAENGLLEPLLNHLIEGSEEMQMEMGSYLGQIVLGHETKTYVAEKASPTLIKMVHSENTLTRKAAFKALVQISSYHPNSRTLVEASIVPIMIEEIFTRRMYNEPMNSKEESAAILANILDSGIALETLQVNTHGHTMTSDYIIYNLIHMLKNSTPDELNINLIKILLCLTKSPKSTATIVSMVKETEASYTLIELINSPHEGLGIASIKLLLKLTPYMGHTLADRLCKTRGQPENLIKNPIETSQITEKHAVSANFLSNLPHKHLPLNLALLHKDTVTTIIHTIKEIQRSGTRTSKFATSYLEGLVGILVRFTTTLHEPQILLLARNHNLTAVFTGLLIRIASDEVQRLSAIGLENLSAESINLSKPPQIKRPKFMKLFYLPRFLSFGSSKQRRLQVCPVHRGICSSQSTFCLLDAKAVERLLVCLEHENVVVVEAALSTICTLLDDKVDVDKSLSVLTGLNAIQHVLNVLREHKQEGLWQKSFWVIEMFLMKGGDQSASDISQDRLFSSTLVTAFHHGDGKTRQIAEKILRHLNKMPTSSTKFL* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01384 1090 ProSiteProfiles U-box domain profile. 301 380 IPR003613 GO:0004842|GO:0016567
Eupl04g01384 1090 Gene3D - 584 760 IPR011989 -
Eupl04g01384 1090 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 80 1089 - -
Eupl04g01384 1090 CDD RING-Ubox_PUB 303 360 IPR045210 -
Eupl04g01384 1090 SUPERFAMILY RING/U-box 293 383 - -
Eupl04g01384 1090 SMART Ubox_2 305 373 IPR003613 GO:0004842|GO:0016567
Eupl04g01384 1090 MobiDBLite consensus disorder prediction 48 68 - -
Eupl04g01384 1090 Pfam U-box domain 306 378 IPR003613 GO:0004842|GO:0016567
Eupl04g01384 1090 Gene3D - 837 1088 IPR011989 -
Eupl04g01384 1090 SMART arm_5 863 904 IPR000225 GO:0005515
Eupl04g01384 1090 SMART arm_5 951 991 IPR000225 GO:0005515
Eupl04g01384 1090 SMART arm_5 454 494 IPR000225 GO:0005515
Eupl04g01384 1090 SMART arm_5 539 579 IPR000225 GO:0005515
Eupl04g01384 1090 SMART arm_5 412 452 IPR000225 GO:0005515
Eupl04g01384 1090 Gene3D - 386 583 IPR011989 -
Eupl04g01384 1090 SUPERFAMILY ARM repeat 389 758 IPR016024 -
Eupl04g01384 1090 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 385 IPR013083 -
Eupl04g01384 1090 SUPERFAMILY ARM repeat 688 1079 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01384 Eupl-Chr4 22185963 22191556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01384 118 258 U-box Gene Family AT1G68940 35.915 9.84e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01384 - - vri:117925589 1293.1