Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl04g01380 | ATGGCGAACGCTTCAGAGCAGGGTGAGTTTATCACAGAGCAAGCTTCGAGAAGATTGGATGTCGAGGTCTCTTCTTCCCCCAGCAAACGCCCGAAAACCCTAACCCTAACCCAAACCCAATCTCCTATCTCCACCTCTAAAGGGAAGGAGAAAATCGAAGAAATCAAAGATGAAAACGATGAAGAATCCAGGGATTCTGAATTCAAGACCTGTGGAATTTGCCTCTCGGAAGACGGGAAGGCGATTCGAGGGTGGATCGATAGCTGCAATCACTACTTCTGTTTCGTCTGTATTATGGAGTGGTCGAAAGTTGAATCTCGCTGCCCTATGTGTAAACAGAGATTCGGTACCATTCGTCGGCCACCCAAGGATGGAGTTTTTCTTCGTGAACGGGTCGTTAAAGTCCCTATTTGCGATCAGGTTTACCATCCTCTTGGAAATGGAACAACGGGGCCTTCTGATCCTTATTCACAAGTCCAGTGTACTGAATGCCATAGTTCAGTGGACGAGAATCTCCTACTACTTTGTGATCTTTGTGACTCGGGCGCTCATACTTACTGTGTTGGTTTGGGGGCTACTGTTCCTGAGGGTGATTGGTATTGCCGTGATTGTACTGTTTTGAGGGATGACCACACCAATAGCCAAATTGATAGTGATTGCTGCAATCAAGATTTTAGAAACTTTGGTACGACTACAGTTGCCGGTGCAAGTGTCTCAATCTCCGAAATCATACAAGAATCATATTTCCTGGAGGTTGATAGACCTCCCAGAAGAACCTCTTCACATTCAGACCTATTTTCATCTACTGTTGTCCCACACAGGGACATCAGTGCAGGAACAAGGGTGACTGATCCTAGTGCTAGAACCTTACGCCGTTGCCGCAATGTGCAGGGTCATATACAGTTGTTGCGTGAAAATTGGAATTCCTTGCGAAGTGGATCATTGGGCTTCTCTTCTAATTTACTTGATTCCGATGGCAAAAGTAATAAGAAAAACAACAGTGGAGCAGTAATTTACGAAAAATCAAGTCAACTACAGTTATCATCTTCCAGGAGTTGTGAGCAAATGACTATGAATGACAATGTTTCTCATGATCTGATGAGCAAGAAAGGCTCACCTGATATTGATAGAGCCTGGAAGATGATGAATATTGCAAAATCAATACAACGGGCTCGTGAGGGCACCAACACTGATTTTCAGGCCTCTAATCATATGTCAGGTAACAGAAATGTGCCAAAGGAGGCAACCAATACAATCTTAAGTTTTTCTCTATCAAAAAGCAAACCGTTTGAACAAAAGGATCTGGGAGGGATTCCATCCAAAAAGAACCATAAATATCATTCTCTTGATATAGCACACGAAAAGGGTAAATCTCAGAAGTCTGAAAAACAAAATCTGAGAAGGGATACAAATACAATGGAGGAGACTTCAAAATTCCATAAGAGGCCTCCAAGTAGTTGTGCATCAGGATATTGTGAACTTCCATCTGCTAGGCAGGTGCGGACATCAGTTCTGGTGGATGTATGTCGTGAAAATGGAGAGAAACAATCCGTGCAGGTCTCAAACTTAATTAGTGGACAAGGTGTGTCTGCTTGCTCAGTTTCTTTGACTGGGTCATCCCCCAGAGGTTCTGATCCATCTTACAGCAGAACAGATTTTGGTGCATCTTCTGGTTGCAAGGCAGAGCTTCCTAAGGAAAAGGGTGGGGTGGACAAGAATTCTGCTGAAGGTATGGCCAGAAAAGATGATGGCGCCAAGAGTGAAGTCCAATCATTGGTTAAGCTGAACTTGAAGTTACAAAGCAGAGATAAGCGGTTAGGTGTTGATGGATTCAAGGAAGTTGCAAGGCTTGCAACTCATACCATCTTGGCAGCATGTGGGCTAGAGCACACAAAATCCAGTGTTCGCTCCTTTCCTATCTCAATATGCAGGCATAATGATCAAAGCCAGCAACTCCGTATGTCGAATCTAATGCCAAGTTCCTGCAGAGAATGCTTTTATGTCTTTGTAAAAGACGTGGTTAGCTCCATCATGGCTGAGAAAATAGCTCATGCTCAGTCAACTTGTTAA | 2070 | 0.4382 | MANASEQGEFITEQASRRLDVEVSSSPSKRPKTLTLTQTQSPISTSKGKEKIEEIKDENDEESRDSEFKTCGICLSEDGKAIRGWIDSCNHYFCFVCIMEWSKVESRCPMCKQRFGTIRRPPKDGVFLRERVVKVPICDQVYHPLGNGTTGPSDPYSQVQCTECHSSVDENLLLLCDLCDSGAHTYCVGLGATVPEGDWYCRDCTVLRDDHTNSQIDSDCCNQDFRNFGTTTVAGASVSISEIIQESYFLEVDRPPRRTSSHSDLFSSTVVPHRDISAGTRVTDPSARTLRRCRNVQGHIQLLRENWNSLRSGSLGFSSNLLDSDGKSNKKNNSGAVIYEKSSQLQLSSSRSCEQMTMNDNVSHDLMSKKGSPDIDRAWKMMNIAKSIQRAREGTNTDFQASNHMSGNRNVPKEATNTILSFSLSKSKPFEQKDLGGIPSKKNHKYHSLDIAHEKGKSQKSEKQNLRRDTNTMEETSKFHKRPPSSCASGYCELPSARQVRTSVLVDVCRENGEKQSVQVSNLISGQGVSACSVSLTGSSPRGSDPSYSRTDFGASSGCKAELPKEKGGVDKNSAEGMARKDDGAKSEVQSLVKLNLKLQSRDKRLGVDGFKEVARLATHTILAACGLEHTKSSVRSFPISICRHNDQSQQLRMSNLMPSSCRECFYVFVKDVVSSIMAEKIAHAQSTC* | 690 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl04g01380 | 689 | CDD | RING-HC_Topors | 70 | 115 | - | - | |
| Eupl04g01380 | 689 | Pfam | Ring finger domain | 70 | 112 | IPR001841 | - | |
| Eupl04g01380 | 689 | PANTHER | F18C1.6 PROTEIN | 35 | 681 | - | - | |
| Eupl04g01380 | 689 | MobiDBLite | consensus disorder prediction | 564 | 585 | - | - | |
| Eupl04g01380 | 689 | SMART | PHD_3 | 160 | 205 | IPR001965 | - | |
| Eupl04g01380 | 689 | MobiDBLite | consensus disorder prediction | 535 | 585 | - | - | |
| Eupl04g01380 | 689 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
| Eupl04g01380 | 689 | MobiDBLite | consensus disorder prediction | 535 | 554 | - | - | |
| Eupl04g01380 | 689 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
| Eupl04g01380 | 689 | Pfam | PHD-finger | 161 | 205 | IPR019787 | - | |
| Eupl04g01380 | 689 | ProSiteProfiles | Zinc finger RING-type profile. | 71 | 112 | IPR001841 | - | |
| Eupl04g01380 | 689 | SUPERFAMILY | FYVE/PHD zinc finger | 152 | 208 | IPR011011 | - | |
| Eupl04g01380 | 689 | MobiDBLite | consensus disorder prediction | 47 | 61 | - | - | |
| Eupl04g01380 | 689 | ProSiteProfiles | Zinc finger PHD-type profile. | 158 | 207 | IPR019787 | - | |
| Eupl04g01380 | 689 | MobiDBLite | consensus disorder prediction | 451 | 481 | - | - | |
| Eupl04g01380 | 689 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 120 | IPR013083 | - | |
| Eupl04g01380 | 689 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 220 | IPR013083 | - | |
| Eupl04g01380 | 689 | ProSitePatterns | Zinc finger RING-type signature. | 89 | 98 | IPR017907 | - | |
| Eupl04g01380 | 689 | SMART | ring_2 | 71 | 111 | IPR001841 | - | |
| Eupl04g01380 | 689 | MobiDBLite | consensus disorder prediction | 451 | 485 | - | - | |
| Eupl04g01380 | 689 | SUPERFAMILY | RING/U-box | 70 | 126 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl04g01380 | Eupl-Chr4 | 22107464 | 22128405 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl04g01380 | 152 | 208 | C2H2 Transcription Factor Family | AT3G01460 | 36.207 | 6.78e-08 | 54.3 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Eupl04g01380 | PHD | 1.8e-08 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl04g01380 | - | - | ming:122088893 | 696.427 |