Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01346 ATGGGTTCTGTTTGCTGCTGTTTGCATGTCGAGGATTTTGAAGGATATGTAAATCCAAACAGTTCCGTTTGCAGAAACTGTTGCTGTGTCAGATGCTTCATTCAGAACTTCTTAACTGCGTACACAACATTATTCCAAAGAGGGGAAGTGCATGACATCCCTTCATCCACTCAGGGGACGGCACCTTTGACTTCTACAGCGTCATATGACAATTCTCTATCTGACATGTACCGCTCTCCTCCAAGGCCTCTGCCTTACAATACCGATCCCAGATGTTTCCGTTTGCAGCGGGATGGACTGGTCTCAAGACGTGAGAAGGGCTCAAGTCATTTGAATGAGGAATATGAACCACTTAGAAGACGTGATTTTGATGAGGGTCTAGAATCTTTAAGCGTGGGAGACAAACGGAATTGGTCTGGTGAAGGAGGATCAAAAGAACACCTTTCTGAGTCTTCAATGAAGTACCCACCGGCAAAGGTGGCAAGTGGAATTGGGTATGTTTATTCATCGTCAGAAGATGAAGATGTCTGCCCAACATGCCTCGAAGAATATACTCCAGAAAACCCCAAAATTATGACACAATGCTCCCATCATTTCCACCTTGGTTGTATATATGAGTGGATGGAGAGGAGCGAAAGCTGTCCTGTCTGTGGAAAGGTGATGCTCTTCGATGAAACGGCTTGA 684 0.4518 MGSVCCCLHVEDFEGYVNPNSSVCRNCCCVRCFIQNFLTAYTTLFQRGEVHDIPSSTQGTAPLTSTASYDNSLSDMYRSPPRPLPYNTDPRCFRLQRDGLVSRREKGSSHLNEEYEPLRRRDFDEGLESLSVGDKRNWSGEGGSKEHLSESSMKYPPAKVASGIGYVYSSSEDEDVCPTCLEEYTPENPKIMTQCSHHFHLGCIYEWMERSESCPVCGKVMLFDETA* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01346 227 CDD RING-H2_AIRP1-like 173 221 - -
Eupl04g01346 227 SMART ring_2 177 217 IPR001841 -
Eupl04g01346 227 MobiDBLite consensus disorder prediction 52 75 - -
Eupl04g01346 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 57 225 - -
Eupl04g01346 227 MobiDBLite consensus disorder prediction 134 154 - -
Eupl04g01346 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Eupl04g01346 227 SUPERFAMILY RING/U-box 172 223 - -
Eupl04g01346 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 223 IPR013083 -
Eupl04g01346 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Eupl04g01346 227 Pfam Ring finger domain 176 217 IPR001841 -
Eupl04g01346 227 MobiDBLite consensus disorder prediction 52 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01346 Eupl-Chr4 21510296 21522206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01346 1 226 C3H Transcription Factor Family AT5G15790 57.082 2.67e-83 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01346 - - ming:122079107 355.525