Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01341 ATGGGAAGAGGGAGAGTAGAGCTGAAGAGGATTGAGAACAAGATTAATCGTCAGGTCACGTTCGCTAAGAGAAGGAATGGTCTTCTTAAGAAGGCTTATGAGCTTTCCATTCTCTGCGATGCTGAGGTTGGTCTCATCATCTTCTCTAACCGGGGCAAGCTCTATGAGTTCTGCAGCAGCAATAGCATGCTCAAGACGCTCGACAGGTACCAAAAATGCAGTTATGGGGCATTGGAAGCTAGCATGCCACCAAAGGATACACAGAGCAGCTACCATGAATACTTGAAGCTCAAAGCAAGGGTTGAGGTTCTACAACGATCTCAAAGAAATCTACTTGGGGAAGACTTGGGCTCATTAAATACGAAGGAGCTCGAGCAGCTAGAGCATCAGCTGGAGATGTCCCTGAAGCAAATAAGATCGACAAAGACTCAGCTTTTGCTCGATCAGCTTTCTGATCTTCAAAGACAGGAACAACATCTACAAGAAACTAATAGAGCCTTAAGAAGGAAGTTGGATGAAAGCAGTGGAGAAATTCCCCTTCAACTATCATGGGAAACTGGTGCGCAGAACATTTCGTATAGCCGCCAACCTGCTCAATCAGAGAGGTTCTTCCAGCCTTTGGAATGCAATTCCACATTGCAGATTGGATACCATCCTTTAGGTCCAGATCAGCTTAACATTGCAGCCCCAGCCCAAAATGTCAATGGCTTCATTCCTGGATGGATGCTCTGA 732 0.4577 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVGLIIFSNRGKLYEFCSSNSMLKTLDRYQKCSYGALEASMPPKDTQSSYHEYLKLKARVEVLQRSQRNLLGEDLGSLNTKELEQLEHQLEMSLKQIRSTKTQLLLDQLSDLQRQEQHLQETNRALRRKLDESSGEIPLQLSWETGAQNISYSRQPAQSERFFQPLECNSTLQIGYHPLGPDQLNIAAPAQNVNGFIPGWML* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01341 243 Coils Coil 124 144 - -
Eupl04g01341 243 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Eupl04g01341 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl04g01341 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl04g01341 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl04g01341 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl04g01341 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl04g01341 243 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Eupl04g01341 243 FunFam MADS-box transcription factor 1 13 88 - -
Eupl04g01341 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Eupl04g01341 243 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl04g01341 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl04g01341 243 Coils Coil 150 177 - -
Eupl04g01341 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl04g01341 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl04g01341 243 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01341 Eupl-Chr4 21395968 21416641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01341 1 243 MADS-box Gene Family AT5G15800 64.885 2.22e-107 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl04g01341 K-box 1.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01341 K09264 - nnu:104597886 418.698